genome.fa.s3955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003955.1 Hibiscus syriacus cultivar Beakdansim tig00008553_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90191

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3758--3790	16	2.1	16	94	0	57	27	24	9	39	1.85
4455--4480	12	2.2	12	100	0	52	15	15	15	53	1.73
4674--4758	29	2.9	29	98	0	161	11	37	30	20	1.88
4776--4835	23	2.6	23	83	0	75	10	35	26	28	1.89
4879--4936	29	2.0	29	86	0	80	24	27	34	13	1.93
5606--5743	12	12.5	11	65	14	61	40	0	1	57	1.13
5646--5709	23	2.8	23	97	0	119	50	0	0	50	1.00
5692--5776	38	2.2	37	85	12	109	43	0	1	55	1.07
5669--5797	64	2.0	64	96	3	242	44	0	1	54	1.09
6091--6140	23	2.3	22	80	16	59	62	2	2	34	1.18
6304--6363	31	1.9	31	86	0	84	43	11	5	40	1.63
6719--7622	8	110.6	8	66	23	174	37	6	2	52	1.42
6716--7498	35	22.1	35	68	23	240	37	6	2	52	1.42
6750--7399	14	48.6	12	69	20	127	38	6	2	52	1.40
6763--7490	64	11.1	64	71	20	371	37	6	2	52	1.42
6969--7614	2	318.0	2	63	24	128	38	6	2	52	1.43
7039--7399	7	53.8	6	70	18	75	38	6	2	52	1.42
6729--7613	22	40.9	22	73	20	431	37	6	2	52	1.42
7375--7574	83	2.4	81	86	8	257	36	7	4	52	1.48
7609--7662	22	2.6	21	88	5	74	42	5	1	50	1.36
7570--7642	29	2.5	29	84	4	85	41	2	2	53	1.29
8435--8469	13	2.7	13	90	0	61	8	17	34	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16038--16074	17	2.2	17	95	0	65	13	16	40	29	1.86
16135--16208	32	2.3	31	90	6	121	24	9	25	40	1.85
21157--21291	67	2.0	67	100	0	270	39	14	13	32	1.85
23121--23167	3	15.7	3	95	0	85	63	0	0	36	0.94
24531--24606	29	2.7	27	73	13	64	27	1	3	67	1.17
29486--29543	29	2.0	29	96	0	107	62	15	5	17	1.50
40370--40410	11	3.6	11	90	3	55	82	0	14	2	0.76
40382--40412	14	2.3	13	94	5	53	90	0	9	0	0.46
40762--40810	19	2.8	17	81	9	55	36	10	6	46	1.63
41103--41328	114	2.0	114	89	1	346	34	16	18	30	1.93
42061--42433	113	3.3	113	93	0	640	39	14	18	27	1.89
42368--42471	40	2.6	40	95	3	183	50	8	24	17	1.74
42255--42584	153	2.2	153	95	1	590	41	12	20	25	1.87
42408--42810	113	3.6	113	97	0	754	39	13	19	27	1.89
42147--42965	266	3.1	265	88	3	1064	39	13	19	26	1.90
42061--43091	379	2.7	379	96	0	1884	39	14	18	27	1.90
42747--42852	40	2.7	40	97	2	196	48	9	24	17	1.77
42634--42965	153	2.2	153	95	1	594	40	13	20	25	1.89
42787--43091	113	2.7	113	94	0	520	39	14	19	27	1.89
42255--43075	266	3.1	266	87	4	1027	39	13	19	26	1.89
43318--43399	30	2.8	30	81	1	94	43	1	0	54	1.07
43320--43386	3	22.7	3	85	8	57	40	1	0	58	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44726--44801	29	2.7	27	73	13	64	27	1	3	67	1.17
46012--46053	16	2.6	16	96	0	75	33	16	11	38	1.86
46165--46197	2	16.5	2	100	0	66	48	0	0	51	1.00
47904--47943	2	20.0	2	100	0	80	50	0	0	50	1.00
62323--62419	46	2.1	46	88	3	142	37	22	19	20	1.95
62320--62411	23	4.0	23	76	5	96	38	23	17	20	1.93
65833--65897	20	3.3	20	93	4	107	15	20	26	38	1.92
68177--68218	17	2.7	15	82	10	50	30	2	0	66	1.04
77748--77790	20	2.3	19	84	8	52	44	9	23	23	1.82
77940--77971	15	2.1	15	94	0	55	56	0	0	43	0.99
79566--79618	22	2.4	22	75	9	54	58	28	5	7	1.48
79736--79767	16	2.0	16	100	0	64	50	0	50	0	1.00
79823--79855	16	2.1	16	94	0	57	57	15	18	9	1.63
80464--80507	23	1.9	23	100	0	88	18	6	52	22	1.69
82900--82989	15	6.0	15	80	11	87	73	6	20	0	1.05
82900--82989	31	3.0	30	86	13	132	73	6	20	0	1.05
82918--83011	10	8.8	10	71	10	53	75	5	18	1	1.05
82907--83016	31	3.6	30	83	9	109	74	5	19	0	1.06
82914--83023	11	10.0	11	73	12	68	74	5	19	0	1.06
85900--86079	67	2.7	66	85	1	234	29	17	11	41	1.84
86099--86643	138	4.0	138	82	4	591	27	29	15	26	1.96
86828--86874	3	16.0	3	95	4	87	34	0	0	65	0.93

Tables:   1

The End!