genome.fa.s3956.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003956.1 Hibiscus syriacus cultivar Beakdansim tig00008555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51636

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7291--7322	12	2.6	12	95	5	55	34	37	9	18	1.83
9308--9585	140	2.0	140	89	1	432	23	22	20	33	1.97
12045--12089	23	1.9	24	81	4	56	24	26	20	28	1.99
14726--15122	43	9.1	43	84	2	323	20	20	22	36	1.96
14726--14940	87	2.5	86	84	3	270	20	22	22	34	1.97
14756--15006	130	1.9	131	86	2	353	21	19	23	35	1.96
14770--15056	130	2.2	130	81	6	348	21	19	22	35	1.96
19764--20099	43	7.8	43	83	3	374	19	22	22	36	1.95
19764--20099	87	3.9	86	83	4	358	19	22	22	36	1.95
19764--20100	130	2.6	131	84	6	411	18	21	22	36	1.95
19989--20093	42	2.5	43	86	9	144	23	20	21	34	1.97
24814--24874	32	1.9	32	82	0	77	39	9	16	34	1.82
24891--25101	70	3.0	68	75	3	188	40	7	18	33	1.79
24827--25101	141	2.0	137	84	5	356	40	7	18	33	1.79
25214--25636	74	5.7	74	76	4	334	38	10	19	32	1.85
25214--25636	75	5.7	73	75	10	322	38	10	19	32	1.85
25214--25525	149	2.1	145	86	2	426	38	10	20	30	1.87
25214--25615	147	2.7	147	83	2	448	37	10	18	33	1.85
25427--25636	38	5.7	37	70	14	146	40	7	18	33	1.79
29302--29361	31	1.9	32	89	3	95	50	5	3	41	1.41
29341--29393	22	2.4	23	75	9	56	52	1	3	41	1.30
29310--29412	53	2.0	52	82	5	127	49	1	5	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29351--29412	31	2.1	31	84	6	83	51	1	6	40	1.37
29449--29581	28	4.6	29	78	10	139	48	3	6	42	1.43
29473--29576	31	3.7	26	68	24	61	48	2	5	43	1.42
29684--29745	5	13.0	5	77	13	51	24	0	1	74	0.91
29668--29731	29	2.2	29	77	5	67	25	0	3	71	1.00
29675--29738	33	2.0	32	84	9	85	23	0	3	73	0.97
29681--29745	18	3.5	17	83	14	67	24	0	1	73	0.91
30060--30100	2	20.5	2	100	0	82	48	0	0	51	1.00
33319--33343	13	1.9	13	100	0	50	24	12	24	40	1.88
37830--37855	12	2.2	12	100	0	52	7	15	34	42	1.75
38845--38872	2	14.0	2	100	0	56	50	50	0	0	1.00
41152--41214	29	2.1	30	82	8	76	34	17	6	41	1.75
51253--51512	116	2.2	116	81	5	294	29	23	11	36	1.89
51239--51419	58	3.1	58	75	15	167	30	23	11	34	1.90

Tables:   1

The End!