Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003959.1 Hibiscus syriacus cultivar Beakdansim tig00008560_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74019

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
435--556
43
2.8
43
79
0
127
30
22
18
28
1.97
1533--1565
2
16.5
2
100
0
66
48
0
0
51
1.00
2319--2362
19
2.1
21
84
12
56
52
0
2
45
1.13
7400--7445
18
2.6
18
85
0
65
41
8
23
26
1.83
7581--7606
11
2.4
11
100
0
52
38
15
0
46
1.46
8433--8551
57
2.1
57
84
7
154
24
20
24
31
1.98
14026--14246
117
1.9
117
81
3
266
27
13
8
50
1.71
15542--15590
19
2.7
17
84
9
53
26
20
28
24
1.99
17637--17751
3
38.3
3
100
0
230
33
0
0
66
0.92
17805--17849
22
2.0
22
95
0
81
20
46
15
17
1.84
21689--21757
11
6.3
11
74
12
52
72
1
2
23
1.06
21689--21756
16
4.2
15
77
18
66
72
1
2
23
1.07
21696--21754
12
5.1
12
76
9
52
71
1
1
25
1.05
23076--23132
3
19.3
3
82
10
73
68
0
3
28
1.06
23220--23333
34
3.6
29
76
21
88
45
4
5
44
1.46
23147--23577
38
11.8
38
75
14
286
45
6
4
43
1.49
23563--23598
2
18.5
2
94
5
65
50
0
0
50
1.00
23524--23638
62
1.9
58
85
7
158
45
6
3
45
1.45
23501--23690
98
1.9
97
84
11
253
44
6
3
44
1.48
23586--23675
37
2.4
38
87
7
121
43
6
4
45
1.50
24318--25029
84
8.6
83
80
4
711
23
20
25
30
1.99
24429--25029
249
2.4
248
90
0
925
24
19
25
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24369--25102
165
4.4
164
82
4
679
24
20
25
29
1.99
25140--25271
66
2.0
66
100
0
264
25
21
25
27
1.99
28526--28570
19
2.4
19
92
3
74
66
8
13
11
1.44
30461--30501
16
2.6
15
88
7
55
73
0
4
21
1.02
31946--32340
75
5.3
72
76
13
290
44
5
4
45
1.47
31890--32342
38
12.2
36
72
14
284
45
5
4
44
1.47
32032--32092
31
2.1
29
85
11
81
44
1
3
50
1.28
32287--32390
53
2.0
51
85
9
140
44
6
3
45
1.48
32258--32450
87
2.2
86
82
12
230
45
7
4
43
1.51
32347--32427
35
2.2
36
80
6
92
44
7
4
43
1.54
33420--33448
2
14.5
2
100
0
58
51
0
0
48
1.00
41424--41551
31
4.2
31
74
10
86
62
10
11
15
1.54
41464--41538
30
2.5
29
80
8
87
62
6
13
17
1.51
45664--45702
13
2.9
14
88
7
55
28
10
2
58
1.44
57148--57190
22
2.0
21
82
13
52
69
4
4
20
1.25
58141--58170
16
1.9
15
93
6
51
10
26
43
20
1.83
58343--58394
26
2.0
26
85
11
70
73
1
3
21
1.10
58439--58670
36
6.3
35
75
16
138
43
6
3
46
1.47
58656--58688
2
16.5
2
100
0
66
48
0
0
51
1.00
58793--58839
2
23.0
2
95
4
85
48
2
0
48
1.13
59355--60735
81
16.9
81
75
8
825
25
19
23
31
1.98
59389--60735
165
8.2
164
82
4
1225
25
19
23
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59534--60735
165
7.3
163
83
3
1272
25
19
23
31
1.98
59389--60735
330
4.1
326
82
4
1392
25
19
23
31
1.98
61833--62059
95
2.6
86
79
15
257
31
21
19
27
1.97
61891--62072
95
1.9
95
89
4
287
30
20
18
30
1.96
66114--66346
37
6.2
38
79
13
200
43
6
3
46
1.46
66207--66287
42
1.9
42
92
0
135
40
4
2
51
1.37
68176--68206
2
15.5
2
100
0
62
48
0
0
51
1.00
69203--69260
31
1.9
29
89
6
89
41
6
10
41
1.66
70184--70304
61
2.0
61
93
0
206
28
11
20
39
1.87
73328--73366
18
2.2
18
85
0
51
43
0
2
53
1.14

Tables:   1

The End!