Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000396.1 Hibiscus syriacus cultivar Beakdansim tig00000729_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44122

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6940--7022
9
9.9
9
77
12
70
79
0
13
7
0.92
6940--7022
17
4.9
17
74
12
73
79
0
13
7
0.92
6975--7010
14
2.6
14
91
4
56
86
0
11
2
0.68
6949--7035
17
5.2
16
72
17
52
78
0
12
9
0.97
10189--10221
3
11.0
3
100
0
66
33
0
0
66
0.92
11875--11917
22
2.0
22
90
0
68
53
2
0
44
1.13
12088--12132
23
2.0
23
86
0
63
53
2
2
42
1.25
12172--12242
33
2.3
29
84
15
90
47
5
0
46
1.26
12235--12311
27
3.0
26
72
18
72
50
0
1
48
1.09
12461--12519
14
4.1
14
78
8
66
35
16
6
40
1.76
14839--14884
8
5.6
8
80
14
58
2
0
15
82
0.76
14839--14880
15
2.7
16
86
13
61
2
0
14
83
0.75
22797--22872
35
2.2
34
81
11
93
46
7
7
38
1.62
26781--26980
98
2.0
99
97
2
375
30
13
17
39
1.88
29125--29165
21
2.0
20
85
4
55
41
0
0
58
0.98
29157--29218
8
7.6
8
72
16
56
30
0
3
66
1.08
29651--29790
64
2.2
64
80
2
156
26
18
27
27
1.98
30470--30516
17
2.9
16
79
14
53
53
2
2
42
1.25
30496--30631
13
10.4
13
71
15
75
46
5
4
44
1.45
30477--30566
31
2.9
30
78
19
105
48
3
2
45
1.31
30496--30643
15
10.0
15
74
16
96
45
5
5
43
1.49
30507--30565
18
3.3
18
79
11
68
47
3
1
47
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30799--30842
17
2.4
18
88
7
63
45
0
27
27
1.54
30799--30843
19
2.5
17
89
7
63
44
0
26
28
1.55
31000--31079
10
8.2
11
77
14
63
46
2
6
45
1.42
31048--31079
2
16.0
2
100
0
64
50
0
0
50
1.00
31133--31194
22
2.9
21
86
9
81
43
32
0
24
1.54
31382--31429
21
2.3
20
86
10
69
50
27
0
22
1.50
31387--31433
21
2.2
21
88
0
76
48
29
0
21
1.50
31826--31857
13
2.5
13
94
0
55
50
9
0
40
1.35
31793--31848
19
2.9
19
89
2
76
48
8
3
39
1.52
31926--32005
7
11.4
7
82
0
88
46
32
1
20
1.58
31925--32000
28
2.7
27
86
8
107
47
31
1
19
1.58
32005--32046
17
2.5
16
88
7
57
33
4
16
45
1.69
32093--32139
7
6.6
7
88
11
69
57
0
12
29
1.36
33786--33853
18
3.7
18
73
23
70
50
29
14
5
1.67
34812--34844
17
1.9
17
93
0
57
45
0
6
48
1.27
43612--44118
55
9.4
54
89
4
729
31
14
24
28
1.94

Tables:   1

The End!