genome.fa.s3960.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003960.1 Hibiscus syriacus cultivar Beakdansim tig00008572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70540

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2785--3881	84	13.3	83	76	7	957	30	24	20	24	1.99
2795--3881	164	6.6	163	86	3	1204	30	24	20	24	1.99
4417--4457	2	20.5	2	84	0	55	48	7	0	43	1.30
4450--4867	39	11.3	38	80	10	372	43	3	5	46	1.46
4669--4872	37	5.5	36	79	11	168	45	3	5	46	1.43
4604--4730	68	1.9	68	87	8	188	42	3	5	48	1.42
4565--4772	105	2.0	104	85	6	287	43	4	5	46	1.47
4522--4880	36	9.9	35	75	17	158	43	3	5	47	1.43
4879--4936	31	1.9	30	86	10	82	22	3	0	74	0.97
4880--4944	9	7.2	9	77	14	55	21	3	1	73	1.05
4876--4955	40	2.1	36	82	13	90	18	3	1	76	1.01
4910--4969	18	3.4	17	76	17	50	11	6	1	80	0.98
6925--6953	2	14.5	2	100	0	58	51	0	0	48	1.00
8191--8230	4	10.0	4	100	0	80	25	0	0	75	0.81
8585--8674	27	3.3	26	100	0	153	42	13	26	17	1.86
8695--8747	18	2.9	18	91	0	88	54	5	30	9	1.55
10410--10466	2	28.5	2	100	0	114	50	0	0	49	1.00
12243--12311	17	4.0	16	72	22	59	39	0	1	59	1.06
12226--12298	36	2.0	36	100	0	146	41	0	2	56	1.14
12226--12280	19	3.0	19	68	26	55	43	0	3	52	1.18
13000--13073	31	2.4	31	93	0	121	10	18	31	39	1.86
13491--13583	45	2.1	45	95	0	168	39	9	17	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15485--15538	20	2.7	20	80	13	65	77	3	5	12	1.07
15792--15871	28	2.9	28	84	0	97	45	26	0	28	1.54
15840--15955	21	5.9	21	65	13	84	43	30	1	24	1.64
15815--15879	28	2.4	28	84	2	78	43	29	0	27	1.56
23204--23262	28	2.1	28	100	0	118	25	6	45	22	1.76
23208--23274	28	2.4	28	89	0	89	26	7	43	22	1.80
23710--23745	3	12.7	3	88	11	58	66	0	0	33	0.92
23933--24257	55	5.9	54	86	3	398	29	24	14	31	1.95
23933--24257	166	2.0	165	89	1	499	29	24	14	31	1.95
23933--24995	54	19.8	55	76	13	476	25	25	17	32	1.97
24256--24906	54	12.3	54	84	5	778	22	25	19	32	1.97
24256--24937	158	4.3	159	82	5	783	22	25	18	32	1.97
24209--24937	212	3.4	211	89	3	1029	23	25	18	32	1.97
25930--25968	17	2.3	17	90	0	60	17	0	0	82	0.68
25931--25968	9	4.3	9	83	6	51	15	0	0	84	0.63
36084--36115	1	32.0	1	100	0	64	100	0	0	0	0.00
38538--38596	28	2.1	28	100	0	118	25	6	45	22	1.76
38542--38608	28	2.4	28	89	0	89	26	7	43	22	1.80
39044--39076	3	11.7	3	87	12	52	66	0	0	33	0.92
40231--40277	12	3.9	12	94	0	76	34	36	17	12	1.87
40287--40340	23	2.3	24	87	3	74	27	18	22	31	1.97
42357--42422	27	2.4	28	85	5	82	30	19	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42370--42429	27	2.2	27	81	0	75	28	21	16	33	1.95
43352--43389	20	1.9	20	88	0	58	21	26	10	42	1.85
44820--44857	16	2.3	17	81	9	51	42	0	2	55	1.14
45804--45900	28	3.4	28	83	8	122	39	10	12	38	1.77
46741--46793	21	2.5	21	82	8	63	39	11	15	33	1.83
46768--46846	22	3.7	21	74	15	65	44	11	13	30	1.80
46751--46828	22	3.5	22	75	16	72	38	12	14	34	1.84
51651--51735	39	2.2	38	80	14	93	14	24	41	20	1.89
51723--51800	19	4.1	19	74	14	70	26	25	26	20	1.99
51729--51799	10	7.4	10	73	19	53	26	26	28	18	1.98
58977--59037	22	2.8	22	89	0	86	8	24	47	19	1.76
59052--59140	10	9.1	10	75	10	69	30	24	25	19	1.98
59041--59139	9	10.3	9	72	10	63	30	25	27	17	1.97
65204--65233	15	2.0	15	100	0	60	13	46	26	13	1.80

Tables:   1

The End!