Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003961.1 Hibiscus syriacus cultivar Beakdansim tig00008576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94276

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
269--321
6
8.8
6
89
0
61
39
1
30
28
1.67
1247--1306
11
5.5
11
80
7
77
36
6
10
46
1.64
1570--1606
15
2.5
15
90
0
56
40
10
8
40
1.70
1607--2738
198
5.8
195
71
15
597
37
13
16
31
1.88
2118--2738
210
3.1
202
75
9
620
37
14
16
32
1.88
6004--6668
196
3.4
198
80
8
590
39
14
15
30
1.87
6686--6848
87
1.9
87
96
0
299
33
14
11
41
1.81
6760--6811
23
2.3
23
89
0
77
32
21
9
36
1.86
10222--10253
12
2.7
12
100
0
64
84
0
15
0
0.63
26316--26375
19
3.6
16
72
18
59
70
0
1
28
0.97
29273--29323
17
3.0
17
94
0
84
23
17
23
35
1.95
29436--29520
36
2.3
36
78
9
84
40
3
11
44
1.58
29518--29549
16
1.9
17
93
6
57
18
6
6
68
1.32
32304--32502
43
4.7
43
81
0
231
34
19
22
23
1.97
32279--32502
43
5.2
42
79
5
209
36
19
22
22
1.95
32304--32502
86
2.3
85
84
1
256
34
19
22
23
1.97
35100--35186
42
2.1
42
84
0
111
32
13
18
35
1.90
35100--35196
42
2.3
42
81
0
104
29
12
18
39
1.87
35944--35990
21
2.2
21
100
0
94
34
4
23
38
1.74
44887--44954
30
2.3
30
97
0
127
38
25
4
32
1.76
47923--47960
16
2.4
17
83
16
55
44
0
0
55
0.99
47917--47959
19
2.1
19
87
12
59
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47917--47962
22
2.1
22
88
8
67
47
0
0
52
1.00
47927--47969
16
2.8
16
82
3
52
41
0
0
58
0.98
48767--48824
26
2.2
26
96
0
107
34
13
17
34
1.89
59782--59833
22
2.4
22
100
0
104
36
7
15
40
1.76
60346--60672
165
2.0
165
91
1
530
35
12
13
38
1.83
60714--61061
73
4.7
73
94
1
615
30
16
13
38
1.88
60714--61061
147
2.4
146
97
0
642
30
16
13
38
1.88
61449--61500
3
17.7
3
88
4
70
40
0
0
59
0.97
61443--61501
9
6.3
9
82
7
55
44
0
0
55
0.99
61498--61534
2
18.5
2
100
0
74
48
0
0
51
1.00
65985--66016
12
2.7
12
90
0
55
65
9
3
21
1.35
69545--69591
23
2.0
24
87
4
69
42
4
4
48
1.42
74282--74335
28
2.0
28
89
10
85
53
27
14
3
1.58
74912--74967
19
2.9
19
97
0
103
42
16
3
37
1.65
79390--79426
19
1.9
19
100
0
74
40
16
5
37
1.71
82506--82620
40
2.8
41
77
2
115
39
13
15
31
1.87
88259--88293
12
2.9
12
100
0
70
8
17
34
40
1.80
88402--88926
166
3.2
166
90
1
779
29
18
17
34
1.94
88419--88926
125
4.1
123
79
4
489
29
19
17
34
1.94
88403--88882
41
11.6
41
80
4
507
29
18
17
34
1.94
92705--93226
43
12.2
43
85
4
578
25
21
19
33
1.97
92705--93226
85
6.1
85
83
4
597
25
21
19
33
1.97

Tables:   1

The End!