Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003962.1 Hibiscus syriacus cultivar Beakdansim tig00008578_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50918

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3028--3065
5
7.6
5
88
11
60
60
0
2
36
1.11
4371--4408
12
2.9
13
88
7
51
71
2
0
26
1.00
4440--4798
38
9.8
37
78
12
359
42
8
3
44
1.52
4440--4751
77
4.2
74
85
8
379
43
8
3
44
1.51
11621--11679
5
12.0
5
80
10
50
71
0
5
23
1.06
11621--11679
15
4.1
15
80
4
59
71
0
5
23
1.06
13063--13231
36
4.6
37
89
5
247
43
6
2
47
1.42
13063--13231
73
2.3
73
88
6
245
43
6
2
47
1.42
13063--13261
73
2.7
73
81
9
233
46
5
2
45
1.37
14548--14580
14
2.4
14
95
5
59
48
0
0
51
1.00
17814--17857
22
2.0
22
86
4
61
29
15
13
40
1.86
18514--18906
44
8.9
44
77
5
326
23
18
23
34
1.96
18486--18862
89
4.3
89
80
4
300
23
17
23
35
1.96
18514--18897
133
2.9
133
81
5
422
23
18
23
34
1.96
22103--22129
2
13.5
2
100
0
54
51
0
0
48
1.00
25497--25540
22
2.0
22
86
4
61
29
11
15
43
1.82
27340--27382
22
2.0
21
90
4
68
53
13
9
23
1.69
29669--29806
59
2.3
59
82
4
154
47
5
4
43
1.45
34392--34523
39
3.4
39
95
0
228
22
22
26
28
1.99
36410--36434
2
12.5
2
100
0
50
48
0
0
52
1.00
37125--37160
19
1.9
19
88
5
56
19
0
22
58
1.40
41036--41067
2
16.5
2
93
6
57
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41036--41067
15
2.2
15
94
5
57
50
0
0
50
1.00
48964--48995
3
10.7
3
100
0
64
31
0
0
68
0.90
48961--48998
9
3.7
10
80
19
51
31
0
0
68
0.90
50413--50463
2
25.5
2
100
0
102
50
0
0
49
1.00

Tables:   1

The End!