genome.fa.s3963.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003963.1 Hibiscus syriacus cultivar Beakdansim tig00008588_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164510

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2552--2583	12	2.7	12	90	0	55	25	12	0	62	1.30
2844--2920	21	3.7	21	75	3	66	37	23	15	23	1.93
11819--11857	20	2.0	20	85	10	53	28	15	28	28	1.96
12220--12246	2	13.5	2	100	0	54	51	0	0	48	1.00
14558--14811	138	1.8	138	83	5	334	42	15	12	29	1.84
15527--15552	12	2.2	12	100	0	52	7	7	0	84	0.77
20145--20189	21	2.1	21	100	0	90	22	31	8	37	1.85
20547--20584	3	13.0	3	94	5	69	65	0	0	34	0.93
27177--27216	21	1.9	21	89	0	62	27	12	7	52	1.66
27339--27369	2	15.5	2	100	0	62	51	0	0	48	1.00
27863--27904	21	2.0	22	85	4	59	33	4	23	38	1.76
29600--29675	36	2.1	36	85	7	100	47	1	3	47	1.29
35304--35357	27	2.0	27	100	0	108	37	22	18	22	1.95
39275--40601	663	2.0	664	93	0	2289	34	18	19	27	1.95
41939--42095	64	2.5	64	83	6	185	33	20	17	28	1.95
42413--42448	18	2.0	18	88	0	54	30	8	16	44	1.77
46268--46424	64	2.5	64	83	6	185	33	20	17	28	1.95
46745--46780	18	2.0	18	88	0	54	30	8	16	44	1.77
47337--47406	18	3.7	18	78	14	77	21	24	30	24	1.99
48274--48304	15	2.1	15	100	0	62	48	0	6	45	1.28
48311--48679	189	2.0	189	91	0	603	31	18	20	28	1.97
54426--54470	23	2.0	23	95	0	81	17	37	13	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54673--54995	36	8.9	36	86	2	414	25	22	13	39	1.90
54725--54818	20	5.1	20	60	27	55	29	22	7	40	1.81
54792--54857	21	3.4	21	68	20	70	24	21	12	42	1.86
54673--54995	145	2.2	144	89	3	495	25	22	13	39	1.90
55027--55108	33	2.4	34	78	8	78	30	14	13	41	1.84
57866--57905	12	3.4	12	82	6	55	12	5	0	82	0.82
57867--57971	25	4.5	23	68	11	70	21	2	0	74	1.01
57881--57965	31	2.6	32	81	11	100	23	1	1	74	0.96
57915--57960	7	5.8	8	84	10	51	21	0	0	78	0.76
58036--58083	20	2.4	19	80	16	53	22	6	6	64	1.39
58808--58835	2	14.0	2	100	0	56	50	0	0	50	1.00
61320--61470	78	1.9	79	90	4	243	33	17	12	35	1.88
66122--66217	46	2.1	45	82	5	113	29	19	19	31	1.97
68896--68944	20	2.5	20	96	0	89	18	24	28	28	1.98
68941--69033	42	2.2	42	82	7	107	25	22	24	26	2.00
72772--72818	21	2.3	21	82	13	55	34	10	2	53	1.48
74730--74778	19	2.7	17	84	9	53	26	20	28	24	1.99
74750--74959	65	3.2	64	79	12	232	25	19	24	30	1.98
78684--78731	17	2.8	17	74	3	51	43	14	4	37	1.65
84715--84800	3	29.0	3	80	9	88	32	3	0	63	1.11
84732--84800	25	2.8	25	90	0	102	36	2	0	60	1.11
84737--84807	22	3.1	22	89	6	97	40	2	0	56	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95834--95888	23	2.4	23	93	3	94	21	36	23	18	1.95
100063--100101	3	13.0	3	88	0	60	0	33	5	61	1.18
100062--100101	15	2.7	15	100	0	80	0	32	7	60	1.25
101053--101087	2	17.5	2	100	0	70	48	0	0	51	1.00
110993--111043	12	4.2	12	85	7	68	27	7	0	64	1.21
123842--123895	28	2.0	28	92	3	92	37	22	27	12	1.91
126409--126444	12	3.0	12	91	0	54	0	27	2	69	1.02
127171--127208	3	12.0	3	89	10	58	63	0	2	34	1.09
128319--128395	20	3.8	20	70	3	73	16	20	22	40	1.91
128387--128472	41	2.1	41	91	0	136	22	18	18	40	1.91
128387--128458	22	3.4	21	67	11	58	22	18	20	38	1.93
128570--128602	6	5.5	6	92	0	57	36	48	15	0	1.45
129097--129141	5	8.6	5	97	2	72	0	20	55	24	1.43
129188--129230	19	2.3	19	100	0	86	44	16	20	18	1.87
129218--129298	41	2.0	41	85	7	110	43	24	14	17	1.87
130024--130075	9	6.1	9	76	13	56	34	0	1	63	1.06
130023--130072	17	3.0	17	91	2	75	36	0	4	60	1.16
132295--132345	13	4.0	13	79	2	59	15	3	13	66	1.39
135966--135995	15	2.0	15	100	0	60	33	13	20	33	1.91
139452--139488	19	1.9	19	94	0	65	32	29	16	21	1.95
139514--139707	20	9.6	20	78	8	196	31	25	17	24	1.97
139573--139647	21	3.6	21	74	16	84	40	25	13	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139514--139729	41	5.3	41	85	5	251	33	25	16	24	1.96
139553--139729	61	2.9	59	75	11	178	34	25	15	23	1.95
139874--139924	22	2.3	22	93	0	93	23	45	11	19	1.83
140309--140340	14	2.3	14	94	0	55	6	21	21	50	1.71
140321--140418	20	4.9	20	78	2	81	16	17	20	45	1.85
140382--140426	20	2.2	20	80	0	54	17	13	15	53	1.73
142329--142428	34	2.9	34	84	0	119	48	18	18	16	1.82
142395--142432	20	1.9	20	94	0	67	47	18	21	13	1.82
142492--142538	20	2.3	20	92	0	76	19	19	25	36	1.95
142506--142568	20	3.2	20	88	0	81	14	15	23	46	1.83
143046--143168	21	5.9	21	75	3	104	21	34	17	25	1.96
143046--143168	42	2.9	41	78	9	131	21	34	17	25	1.96
143887--144274	185	2.1	183	91	1	625	45	7	3	43	1.51
145315--145351	14	2.6	14	100	0	74	29	0	21	48	1.50
145351--145458	27	3.3	34	70	21	113	27	4	14	52	1.61
145329--145481	62	2.4	63	93	5	254	28	3	16	50	1.61
145533--145570	20	1.9	20	88	0	58	42	28	15	13	1.85
145609--145739	20	6.8	20	80	10	157	26	19	21	32	1.97
145710--145992	140	2.0	140	97	0	530	43	15	13	27	1.84
146050--146084	18	1.9	18	94	0	61	17	2	25	54	1.57
148338--148390	23	2.2	24	93	3	90	41	20	16	20	1.90
149205--149295	20	4.5	20	72	8	85	24	19	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149222--149316	41	2.3	41	88	0	145	24	17	24	33	1.96
149423--149459	19	1.9	19	88	0	56	24	16	27	32	1.96
150359--150385	5	5.4	5	100	0	54	0	77	0	22	0.76
153669--153707	19	2.1	19	85	0	51	43	5	0	51	1.24
156964--157032	5	13.4	5	72	17	52	33	1	0	65	1.02
159328--159379	21	2.5	21	100	0	104	25	3	28	42	1.72
161613--161650	19	2.0	19	89	0	58	34	0	15	50	1.45
161691--161752	19	3.2	19	75	6	54	32	0	12	54	1.38
162361--162401	17	2.4	17	91	0	64	21	2	0	75	0.92
162425--162492	13	6.6	10	79	17	61	25	1	0	73	0.92
162425--162492	14	4.8	13	73	20	57	25	1	0	73	0.92

Tables:   1

The End!