Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003964.1 Hibiscus syriacus cultivar Beakdansim tig00008589_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89567

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4406--4444
13
2.9
13
80
3
51
74
2
5
17
1.12
4533--4597
30
2.2
29
81
5
76
47
4
7
40
1.53
4561--4724
39
4.2
37
75
21
133
42
4
4
48
1.44
4570--4724
41
4.0
38
78
16
142
41
5
3
49
1.41
4708--4744
2
19.5
2
83
10
51
45
2
0
51
1.15
5434--6471
81
12.8
81
76
7
535
25
20
22
31
1.98
5434--6770
164
8.2
163
80
5
1154
25
19
22
31
1.98
5590--6770
81
14.5
80
75
9
687
26
19
22
31
1.98
10854--10904
21
2.4
21
84
12
68
72
3
3
19
1.16
12052--12098
3
15.3
3
78
12
51
63
4
0
31
1.13
12037--12098
30
1.9
33
84
12
85
67
3
0
29
1.06
12156--12229
33
2.3
33
88
6
107
47
4
6
41
1.49
12122--12354
38
6.2
37
78
12
192
42
6
3
46
1.47
12188--12295
42
2.7
39
87
5
137
40
5
4
49
1.47
12340--12373
2
17.5
2
93
6
61
50
0
0
50
1.00
15259--15342
28
2.8
30
74
13
84
39
10
7
42
1.67
15259--15347
32
2.9
31
80
9
103
41
10
6
41
1.65
21203--21882
334
2.0
338
89
5
1058
44
8
14
32
1.75
26754--26836
21
3.9
21
75
9
78
18
25
34
21
1.96
26777--26838
20
2.9
21
85
7
81
17
25
35
20
1.95
39591--39693
24
4.5
24
71
18
85
32
34
1
31
1.69
39571--39659
42
2.1
42
97
0
169
31
37
2
29
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39573--39636
19
3.2
18
69
23
56
34
34
3
28
1.73
39672--39711
15
2.7
15
88
0
53
30
27
2
40
1.70
39821--39876
24
2.3
24
81
0
67
32
39
0
28
1.57
39907--39936
15
2.0
15
93
0
51
30
20
3
46
1.66
42979--43004
2
13.0
2
100
0
52
50
0
0
50
1.00
43400--43441
21
2.0
21
86
4
59
45
0
2
52
1.13
44802--44856
25
2.2
25
93
0
92
30
21
14
32
1.93
47933--47967
11
3.2
11
100
0
70
65
0
0
34
0.93
50537--50580
22
2.0
22
82
8
54
36
9
0
54
1.32
55089--55131
14
2.9
14
80
13
50
51
0
0
48
1.00
62267--62298
13
2.5
13
95
5
57
71
12
9
6
1.29
65997--66027
16
1.9
16
100
0
62
58
22
12
6
1.58
66093--66167
10
7.7
10
67
21
52
56
21
13
9
1.65
66097--66161
16
4.1
16
91
0
112
55
23
13
7
1.64
66908--66955
10
4.4
10
78
19
51
54
25
12
8
1.65
66915--66956
14
3.3
14
75
25
56
52
26
14
7
1.67
66908--66956
24
2.0
24
100
0
98
53
24
14
8
1.68
67592--67756
77
2.1
79
90
3
262
39
7
1
51
1.40
72030--72104
10
7.7
10
68
21
52
56
22
12
9
1.64
72034--72098
16
4.1
16
95
0
121
56
23
12
7
1.61
73085--73135
24
2.1
24
85
7
68
56
19
11
11
1.65
73105--73150
14
3.3
14
96
0
83
50
26
15
8
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75831--75909
34
2.4
34
85
8
101
37
0
1
60
1.05
77632--77679
21
2.3
21
85
0
60
25
39
12
22
1.89
77683--77776
21
4.5
21
90
5
129
19
34
25
21
1.96
80702--80739
13
3.0
13
88
3
60
44
0
0
55
0.99

Tables:   1

The End!