genome.fa.s3965.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003965.1 Hibiscus syriacus cultivar Beakdansim tig00008592_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107155

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84--180	50	1.9	50	95	0	176	30	21	13	34	1.92
2372--2399	14	2.0	14	100	0	56	14	21	14	50	1.78
5439--5473	18	1.9	18	88	0	52	17	42	22	17	1.88
10441--10492	20	2.7	19	85	5	68	34	17	13	34	1.89
18095--18152	29	2.0	29	86	0	80	46	1	3	48	1.29
25252--25281	5	5.8	5	96	4	51	20	0	40	40	1.52
25706--25796	31	2.9	31	91	0	146	36	15	24	24	1.94
32530--32624	33	2.9	33	100	0	190	21	14	25	38	1.91
34158--34225	31	2.3	31	89	5	104	25	27	13	33	1.93
49738--49777	20	2.0	20	85	4	55	25	0	10	65	1.24
49834--49873	17	2.3	18	87	8	57	57	10	5	27	1.52
50710--50741	2	16.0	2	100	0	64	50	0	0	50	1.00
52379--52433	13	4.2	13	80	0	65	49	9	3	38	1.52
55256--55295	22	1.9	20	85	10	53	50	7	0	42	1.30
57592--57622	2	15.5	2	100	0	62	51	0	0	48	1.00
58668--58749	24	3.4	24	78	6	94	42	32	19	4	1.72
58675--58779	48	2.2	48	82	0	120	40	31	20	7	1.80
60425--60459	2	17.5	2	100	0	70	51	0	0	48	1.00
63609--63655	22	2.1	22	92	7	78	46	10	23	19	1.80
64693--64752	31	1.9	31	82	0	75	33	11	8	46	1.70
65189--65264	39	1.9	39	84	5	100	34	13	5	47	1.65
65509--65575	25	2.9	23	75	22	68	41	5	0	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65517--65575	21	2.6	22	85	15	84	42	6	0	50	1.28
65526--65590	25	2.5	24	83	16	78	41	4	0	53	1.21
71320--71392	6	12.2	6	97	0	128	31	49	16	2	1.60
71390--71443	5	10.8	5	93	0	81	18	37	40	3	1.69
77308--77386	6	13.2	6	97	0	140	31	49	16	2	1.59
77384--77427	5	8.8	5	94	0	61	13	38	40	6	1.71
77692--77751	3	20.0	3	80	19	56	66	0	30	3	1.07
77695--77747	15	3.5	15	80	19	74	66	0	30	3	1.10
77692--77750	18	3.6	18	74	25	76	66	0	30	3	1.08
77692--77751	30	2.0	30	100	0	120	66	0	30	3	1.07
78876--78954	38	2.1	38	81	11	90	41	1	0	56	1.07
79836--79904	30	2.2	30	85	15	95	34	5	17	42	1.73
79845--79904	30	2.0	30	93	6	104	33	6	16	43	1.74
80082--80195	20	5.7	20	84	2	138	20	28	21	29	1.98
80140--80204	21	3.1	21	80	8	80	20	27	27	24	1.99
80082--80204	41	3.0	41	82	3	142	20	28	22	28	1.99
80563--80632	34	2.1	32	84	5	86	31	15	28	24	1.96
80990--81068	31	2.5	31	85	4	97	30	3	5	60	1.36
81011--81098	31	2.7	32	84	10	108	26	4	6	62	1.40
81141--81198	29	2.0	29	90	6	91	34	12	10	43	1.76
86211--86267	18	3.2	17	78	14	62	38	21	7	33	1.80
86816--86849	17	2.0	17	88	0	50	32	26	11	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87290--87332	20	2.2	20	100	0	86	27	18	20	32	1.96
90200--90398	44	4.5	44	90	0	263	31	17	18	33	1.94
90327--90391	21	3.0	21	66	22	53	32	18	15	33	1.92
94232--94452	117	1.9	117	84	5	295	29	14	8	47	1.73

Tables:   1

The End!