Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003967.1 Hibiscus syriacus cultivar Beakdansim tig00008594_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70125

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4914--4938
4
6.2
4
100
0
50
76
0
0
24
0.80
6031--6168
68
2.0
68
98
0
267
42
15
8
32
1.78
6715--6803
30
3.0
31
74
19
91
33
15
7
42
1.76
11310--11341
13
2.5
13
94
0
55
46
12
0
40
1.42
17630--17698
20
3.4
20
70
18
70
18
24
24
31
1.98
17621--17708
41
2.1
41
100
0
176
20
23
27
28
1.99
18500--18544
6
7.5
6
97
0
81
0
15
53
31
1.43
18622--19040
41
10.2
42
95
2
728
31
26
20
21
1.98
18620--19040
206
2.0
206
95
0
761
31
25
20
21
1.98
19628--19733
52
2.0
52
92
0
176
33
14
3
49
1.61
20762--20790
14
2.0
15
93
6
51
58
0
0
41
0.98
20622--21245
326
1.9
327
84
5
839
37
10
12
39
1.78
36980--37025
20
2.3
19
85
14
58
26
15
8
50
1.73
47317--47362
20
2.3
19
85
14
58
26
15
8
50
1.73
48043--48112
32
2.2
32
94
0
122
28
34
0
37
1.58
51272--51332
31
1.9
32
83
6
79
52
4
0
42
1.23
52286--52332
5
9.8
5
82
13
55
78
0
2
19
0.85
52286--52332
9
4.9
10
77
17
55
78
0
2
19
0.85
52286--52356
16
4.4
17
77
8
76
71
0
2
25
0.99
52382--52430
19
2.6
18
81
9
62
73
2
4
20
1.10
54899--54957
5
12.8
5
89
7
56
67
0
10
22
1.20
54899--54955
10
6.3
9
88
6
64
68
0
10
21
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55497--55548
21
2.5
21
100
0
104
42
28
3
25
1.72
57884--57937
20
2.7
19
88
8
65
70
0
0
29
0.88
57892--57937
20
2.3
20
92
7
76
73
0
0
26
0.83
57895--57953
10
5.5
11
75
18
54
67
0
1
30
1.00
57883--57958
20
3.5
22
75
18
61
68
0
1
30
0.98
60154--60217
30
2.1
30
94
0
110
10
25
35
28
1.89
61244--61282
19
2.1
19
85
9
53
51
0
5
43
1.24
61263--61320
28
2.1
28
80
6
64
53
5
0
41
1.23
65326--65372
25
2.0
24
84
16
62
23
12
8
55
1.64
65489--65525
19
1.9
19
88
0
56
32
27
16
24
1.96
65632--65726
41
2.3
41
88
0
145
33
24
17
24
1.96
65653--65743
20
4.5
20
72
8
85
28
27
19
24
1.99
66558--66611
24
2.2
24
93
0
90
20
18
20
40
1.91
68858--68891
17
1.9
18
88
5
52
52
26
2
17
1.58
68949--69230
140
2.0
139
97
0
528
27
13
16
43
1.85
69201--69331
20
6.8
20
79
10
148
33
21
18
26
1.96
69229--69255
14
1.9
14
100
0
54
48
29
14
7
1.71
69511--69610
27
3.4
27
73
17
101
51
18
2
29
1.57
69459--69610
61
2.4
63
93
6
254
51
17
2
28
1.59
69497--69593
27
3.2
30
72
18
110
53
15
3
27
1.57
69588--69623
14
2.6
14
100
0
72
47
22
0
30
1.52

Tables:   1

The End!