Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003968.1 Hibiscus syriacus cultivar Beakdansim tig00008596_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74376

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
587--641
24
2.3
24
81
6
58
54
0
3
41
1.18
1231--1255
2
12.5
2
100
0
50
52
0
0
48
1.00
10480--10718
130
1.8
133
90
5
389
45
4
2
47
1.37
15062--15109
21
2.3
21
92
0
78
35
14
20
29
1.93
18313--18352
16
2.4
17
87
8
55
62
2
5
30
1.29
19053--19093
10
4.1
10
84
12
57
31
29
0
39
1.57
19114--19142
14
2.1
14
93
6
51
20
6
6
65
1.40
19217--19438
111
2.0
111
96
0
408
36
8
10
44
1.70
20949--20983
18
1.9
18
100
0
70
31
28
17
22
1.96
23378--23420
21
2.0
21
81
0
50
30
30
25
13
1.94
23961--24268
150
2.1
150
95
0
555
27
16
21
34
1.95
30323--30365
21
2.0
21
81
0
50
30
30
25
13
1.94
30906--31221
150
2.1
150
94
1
555
26
17
21
34
1.95
32451--32574
50
2.5
50
81
1
133
21
28
33
16
1.95
37153--37222
3
23.3
3
91
0
86
42
0
0
57
0.99
37742--37785
9
4.5
10
83
13
56
75
2
22
0
0.92
37742--37785
5
9.0
5
80
14
56
75
2
22
0
0.92
37745--37785
14
2.9
14
92
3
64
75
2
21
0
0.92
39311--39335
7
3.6
7
100
0
50
68
0
0
32
0.90
51162--51442
83
3.3
84
88
6
415
27
13
23
35
1.92
51346--51649
114
2.7
115
97
1
576
31
13
22
32
1.93
52368--53313
112
8.5
111
94
2
1558
37
14
18
29
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53259--53377
55
2.2
55
96
0
220
45
13
17
23
1.84
53704--53770
3
22.3
3
90
0
107
38
0
0
61
0.96
54284--54320
11
3.5
11
85
14
51
75
5
18
0
0.99
54288--54329
15
2.8
15
89
7
59
76
2
21
0
0.90
54285--54329
20
2.2
20
88
7
65
75
2
22
0
0.91
60215--60270
2
28.0
2
100
0
112
50
0
0
50
1.00
63979--64036
8
6.9
8
81
13
64
13
3
3
79
0.99
67536--67581
2
23.0
2
100
0
92
50
0
0
50
1.00
67829--67972
8
18.5
8
85
7
163
84
0
13
2
0.74
67829--67896
1
68.0
1
82
0
82
91
0
8
0
0.43
67822--67957
15
9.0
15
81
15
70
83
0
13
2
0.77
67831--67957
13
9.4
13
77
20
61
84
0
13
2
0.72
68608--68682
28
2.7
28
93
0
132
41
30
2
25
1.69
70225--70633
193
2.1
192
86
5
569
29
14
21
35
1.93
70872--70987
54
2.1
56
82
3
137
34
8
17
39
1.80
70807--70987
55
3.2
54
71
12
134
35
10
17
37
1.84
71867--72226
91
4.0
91
89
0
506
38
15
21
25
1.92
72137--72637
117
4.3
117
84
4
602
36
15
21
26
1.93
72137--72588
232
1.9
230
85
3
620
36
15
21
27
1.93
73957--73999
20
2.0
20
91
8
68
4
9
9
76
1.14

Tables:   1

The End!