genome.fa.s3969.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003969.1 Hibiscus syriacus cultivar Beakdansim tig00008602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70445

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12404--12444	2	19.5	2	90	9	64	48	4	46	0	1.23
15325--15356	12	2.7	12	100	0	64	9	21	25	43	1.82
16974--16999	13	2.0	13	100	0	52	53	7	15	23	1.67
17375--17640	133	2.0	133	96	0	487	41	13	21	22	1.89
18951--19001	19	2.6	20	87	3	68	45	5	15	33	1.71
21020--21084	23	2.8	23	95	0	112	26	21	26	26	2.00
21102--21313	103	2.1	103	93	0	361	37	24	11	26	1.90
25521--25563	6	7.2	6	79	10	52	0	18	2	79	0.85
25521--25566	24	2.0	23	91	4	74	0	17	4	78	0.91
25750--25788	18	2.1	19	86	13	55	69	0	15	15	1.20
26356--26406	19	2.6	20	87	3	68	45	5	15	33	1.71
26657--26746	31	3.0	31	93	3	148	32	5	16	45	1.71
26811--26877	19	3.5	19	91	0	98	40	10	13	35	1.79
26984--27025	21	2.0	21	95	0	75	23	21	28	26	1.99
27309--27378	34	2.1	32	89	5	104	31	15	31	21	1.95
30821--30855	18	1.9	18	94	0	61	25	34	20	20	1.96
38991--39035	2	22.5	2	91	8	74	51	0	2	46	1.13
39290--39382	47	2.0	47	91	0	150	40	22	13	22	1.89
40382--40409	6	4.7	6	100	0	56	50	0	35	14	1.43
41310--41375	29	2.3	29	97	0	123	42	1	10	45	1.48
43104--43136	13	2.5	13	100	0	66	36	0	0	63	0.95
47392--47417	12	2.2	12	100	0	52	34	19	15	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49897--49931	2	18.0	2	94	5	63	51	0	0	48	1.00
53200--53237	20	1.9	20	100	0	76	39	7	21	31	1.82
55170--55643	194	2.5	192	80	5	506	38	11	13	36	1.81
55638--55713	15	5.1	15	69	13	59	43	18	9	28	1.81
61995--62039	23	2.0	23	86	8	65	71	4	8	15	1.28
67491--67542	2	25.5	2	96	3	95	50	0	1	48	1.12
67546--67602	30	1.9	30	82	13	73	57	14	1	26	1.46

Tables:   1

The End!