genome.fa.s397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000397.1 Hibiscus syriacus cultivar Beakdansim tig00000730_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136917

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4860--4893	15	2.3	15	89	0	50	23	29	5	41	1.78
5528--5582	24	2.2	26	80	9	60	38	7	3	50	1.48
8447--8477	15	2.1	15	100	0	62	41	12	32	12	1.81
10511--10541	12	2.6	12	100	0	62	0	9	6	83	0.79
10648--10734	14	5.9	14	71	18	61	21	2	3	72	1.11
10654--10757	9	11.0	9	75	12	84	23	3	1	71	1.13
10710--10800	35	2.6	34	77	8	94	19	6	0	73	1.05
10648--10757	5	23.0	5	73	12	63	21	3	2	71	1.14
10947--10972	11	2.4	11	100	0	52	0	0	7	92	0.39
14882--15083	99	2.0	99	90	0	314	36	13	16	33	1.89
16394--16964	85	6.7	85	85	3	627	34	19	18	26	1.95
16399--16978	255	2.3	255	83	4	715	34	20	19	26	1.96
18461--18491	2	16.0	2	93	6	55	48	0	0	51	1.00
18491--18526	17	2.1	17	89	5	54	8	8	0	83	0.82
18602--18707	5	21.0	5	77	12	110	20	1	1	75	0.99
18619--18744	9	13.8	9	71	18	91	19	3	1	75	1.02
21081--21126	23	2.0	23	83	8	58	41	2	0	56	1.11
21130--21182	27	1.9	28	84	3	72	41	15	7	35	1.75
24569--24626	28	2.0	29	83	9	75	32	22	17	27	1.96
25511--25579	31	2.3	31	90	5	106	33	13	28	24	1.93
25659--25688	3	10.0	3	100	0	60	33	0	0	66	0.92
27540--27609	31	2.3	31	84	0	86	27	25	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27551--27617	31	2.2	31	91	0	107	20	29	13	35	1.91
33819--33871	20	2.7	20	84	0	70	24	28	16	30	1.97
35756--35787	15	2.1	15	94	0	55	37	9	6	46	1.61
37554--37885	45	8.1	43	70	22	252	35	11	23	29	1.90
37584--37977	79	5.0	79	90	3	607	36	12	23	27	1.91
37708--37775	34	2.0	34	88	0	100	38	10	22	29	1.87
38272--38344	29	2.5	30	84	8	96	50	0	23	26	1.49
38288--38360	29	2.5	29	86	6	103	47	1	24	26	1.60
40362--40519	65	2.4	64	83	6	194	31	18	20	29	1.96
43089--43210	21	5.6	21	67	12	68	24	19	24	31	1.98
48489--48594	46	2.3	46	90	6	162	31	20	20	27	1.98
48916--49169	139	1.8	137	86	5	368	37	7	6	47	1.59
49226--49285	23	2.6	23	78	14	70	43	1	5	50	1.34
53358--53407	20	2.5	20	80	0	64	32	6	28	34	1.81
60138--60294	77	2.0	77	97	0	296	31	19	12	36	1.89
64007--64062	24	2.3	24	81	0	67	14	8	19	57	1.63
64467--64509	10	4.7	10	78	21	58	9	11	20	58	1.61
64473--64505	16	2.1	16	100	0	66	6	12	24	57	1.57
64574--64614	16	2.7	16	85	7	59	12	9	17	60	1.57
65441--65466	2	13.0	2	100	0	52	50	0	0	50	1.00
65638--65709	31	2.4	31	82	13	80	34	8	4	52	1.51
70796--70832	7	5.4	7	87	6	58	24	29	29	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70839--70917	19	4.2	18	85	6	86	27	30	25	16	1.97
70839--70917	9	8.3	9	79	10	86	27	30	25	16	1.97
70839--70902	28	2.2	28	89	8	94	28	31	25	15	1.96
73739--73772	17	1.9	18	88	5	52	32	2	5	58	1.37
82296--82322	14	1.9	14	100	0	54	7	22	3	66	1.33
86830--87327	136	3.7	134	82	6	547	36	17	20	25	1.95
88905--88958	24	2.2	25	83	3	65	31	1	5	61	1.30
92113--92170	17	3.4	17	95	0	98	15	22	43	18	1.88
92087--92123	7	5.4	7	87	6	58	24	29	29	16	1.96
92164--92253	19	4.7	19	87	6	119	27	30	24	17	1.97
92180--92252	9	7.7	9	79	11	83	28	30	24	16	1.96
98024--98061	20	1.9	20	88	0	58	50	0	0	50	1.00
101253--101286	2	17.5	2	87	6	52	50	0	47	2	1.16
102236--102312	3	25.7	3	100	0	154	67	0	0	32	0.91
102774--102806	13	2.5	13	95	0	57	63	0	3	33	1.10
103802--103966	20	6.9	26	64	27	98	19	24	12	43	1.86
103791--103966	47	3.7	47	96	0	316	19	24	12	43	1.86
104402--104482	34	2.4	34	85	0	99	30	20	16	32	1.95
105739--105819	34	2.4	34	85	0	99	30	20	16	32	1.95
108374--108543	82	2.1	79	82	6	198	21	18	22	37	1.94
108510--109170	89	7.4	89	85	1	806	30	20	18	30	1.96
108532--109167	267	2.4	267	88	1	925	30	20	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114352--114382	16	1.9	16	93	0	53	32	0	16	51	1.44
115464--115778	149	2.1	149	95	1	578	27	16	21	34	1.95
115746--115790	23	2.0	23	90	0	72	22	26	26	24	2.00
118491--118648	63	2.5	64	87	7	216	28	16	22	32	1.96
121300--121422	44	2.8	42	73	16	108	25	18	27	28	1.98
127203--127362	65	2.5	65	86	5	209	26	16	23	33	1.95
129712--129736	10	2.5	10	100	0	50	20	28	0	52	1.47
134286--134327	15	2.6	16	82	17	52	61	0	4	33	1.17
135333--135378	20	2.3	20	84	0	56	36	23	28	10	1.89

Tables:   1

The End!