genome.fa.s3971.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003971.1 Hibiscus syriacus cultivar Beakdansim tig00008610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80224

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2309--2338	15	1.9	16	93	6	53	33	6	10	50	1.62
7696--7924	46	5.0	46	91	1	345	40	16	22	20	1.91
14676--14840	46	3.6	46	90	1	251	43	15	18	21	1.87
17716--17753	17	2.2	17	90	0	58	23	34	28	13	1.92
20777--21035	129	2.0	130	94	0	457	30	13	18	36	1.90
25676--25737	21	3.0	21	73	13	58	62	8	1	27	1.32
27948--28092	64	2.3	65	85	4	188	28	22	18	30	1.97
29055--29095	20	2.1	20	86	4	57	48	24	17	9	1.76
29131--29162	13	2.5	13	100	0	64	78	15	6	0	0.95
29135--29168	13	2.8	12	91	8	52	76	14	8	0	1.01
29603--29760	20	7.9	20	78	8	180	20	16	23	39	1.91
29607--29768	40	4.1	39	83	9	220	19	15	23	41	1.90
29764--29803	20	2.0	20	95	0	71	27	15	17	40	1.89
29879--29928	19	2.5	20	83	3	57	26	14	26	34	1.94
40160--40214	13	4.2	13	90	0	83	27	21	16	34	1.95
44195--44240	21	2.2	21	100	0	92	15	30	32	21	1.94
51692--51850	36	4.4	36	86	3	178	35	23	18	22	1.96
52046--53304	54	23.7	54	81	7	1135	32	18	25	24	1.97
52241--52406	55	3.0	55	91	0	269	30	16	24	28	1.96
52241--52436	55	3.6	55	87	4	249	30	16	22	30	1.96
52046--53304	158	7.9	159	77	8	1156	32	18	25	24	1.97
52034--53351	212	6.2	208	78	9	1211	32	17	25	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53309--53681	55	6.8	55	84	6	400	32	14	23	29	1.95
53264--53636	111	3.4	110	82	5	429	31	15	24	28	1.96
53303--53681	166	2.3	163	83	4	440	31	14	24	29	1.95
53309--53678	111	3.4	111	82	4	389	32	14	23	29	1.94
54960--55005	21	2.2	21	100	0	92	15	30	32	21	1.94
56849--56880	13	2.5	13	100	0	64	43	9	9	37	1.69
58930--59346	54	7.7	54	74	7	274	31	13	22	32	1.92
60842--60879	19	2.0	20	84	5	51	34	0	2	63	1.09
61446--61536	3	30.3	3	97	0	173	31	1	0	67	0.98
63247--63305	29	2.0	29	93	0	100	38	8	1	50	1.43
64593--64631	17	2.3	18	86	8	55	61	5	5	28	1.39
65053--65115	2	31.5	2	100	0	126	50	0	0	49	1.00
67147--67478	91	3.7	91	93	2	528	34	21	19	25	1.96
67567--68033	43	10.3	43	76	12	443	29	29	13	27	1.94
67561--68033	86	5.2	86	76	12	489	28	29	13	28	1.94
67723--67981	55	5.2	52	74	16	189	28	29	13	28	1.94
67647--68033	141	2.7	141	93	0	677	28	29	13	28	1.94
68064--68391	36	9.0	36	77	11	221	35	14	23	26	1.93
68194--68279	21	4.4	20	72	19	83	38	12	25	23	1.90
68158--68330	57	3.1	57	82	9	189	36	12	24	25	1.91
68267--68311	15	3.0	15	93	0	72	28	11	31	28	1.91
68247--68347	51	2.0	51	94	0	175	34	13	26	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68715--68803	34	2.6	34	92	0	142	35	11	21	31	1.89
68907--69043	33	4.2	32	87	6	177	32	24	14	29	1.94
68910--69043	66	2.0	66	89	2	207	32	24	14	29	1.94
74494--74532	17	2.3	18	86	8	55	61	5	5	28	1.39
74953--74982	2	15.0	2	100	0	60	50	0	0	50	1.00
75082--75118	2	18.5	2	100	0	74	51	0	0	48	1.00
75463--75506	16	2.7	15	83	13	52	72	15	0	11	1.11

Tables:   1

The End!