Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003972.1 Hibiscus syriacus cultivar Beakdansim tig00008616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  173427

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
810--867
29
2.0
30
86
3
82
56
3
3
36
1.33
19428--19538
48
2.3
48
83
6
127
18
15
17
48
1.81
19466--19538
24
3.0
24
83
0
101
17
10
19
52
1.74
19469--19534
12
5.6
12
71
8
55
15
12
19
53
1.73
25620--25740
39
3.1
39
86
2
163
19
24
24
31
1.98
30388--30435
19
2.4
20
80
13
55
45
0
2
52
1.12
31985--32022
6
6.3
6
100
0
76
15
0
34
50
1.45
39830--39900
33
2.2
33
97
0
133
33
5
46
14
1.67
47320--47354
17
2.1
17
94
0
61
22
5
14
57
1.59
50693--50795
44
2.2
46
88
6
147
26
10
21
41
1.85
60453--60563
16
6.7
15
72
20
55
72
0
21
5
1.11
60453--60559
25
4.2
25
70
19
71
71
0
21
5
1.11
60503--60563
9
7.1
9
73
17
58
73
0
21
4
1.01
60453--60563
17
6.6
16
75
18
77
72
0
21
5
1.11
60453--60548
50
1.9
49
81
12
115
72
1
20
5
1.09
61700--62269
51
10.9
51
93
2
753
29
15
26
29
1.96
61710--62349
51
12.1
54
90
4
445
29
15
25
29
1.96
66471--66505
17
2.1
17
94
0
61
22
5
14
57
1.59
67984--68043
30
2.0
31
86
3
86
41
1
3
53
1.27
73060--73094
17
2.1
16
89
5
52
31
20
8
40
1.82
79808--79851
22
2.0
22
86
4
61
40
25
6
27
1.80
80291--80454
60
2.7
59
76
6
150
37
20
2
40
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86654--86744
44
2.1
44
100
0
182
21
20
27
29
1.98
96827--96869
21
2.0
21
86
0
59
32
25
23
18
1.97
96897--96934
20
1.9
20
88
0
58
23
34
31
10
1.89
97413--97733
103
3.1
103
96
0
588
26
12
23
37
1.91
97762--97812
23
2.2
23
89
6
77
21
25
23
29
1.99
103847--103889
21
2.0
21
90
0
68
32
27
23
16
1.96
103917--103954
20
1.9
20
88
0
58
23
34
31
10
1.89
104429--104730
103
2.9
103
97
0
577
26
12
23
37
1.90
104747--104809
23
2.7
23
85
4
83
20
25
26
26
1.99
128999--129025
10
2.7
10
100
0
54
14
22
40
22
1.90
129667--129700
17
2.0
17
88
0
50
44
8
8
38
1.67
129681--129745
27
2.6
25
85
9
87
36
15
15
32
1.89
135738--135775
3
12.7
3
100
0
76
65
0
0
34
0.93
136833--136858
5
5.2
5
100
0
52
23
57
19
0
1.40
139810--139854
25
2.0
22
83
16
56
48
17
0
33
1.48
146403--146559
61
2.6
60
87
4
235
36
16
12
33
1.87
146403--146586
61
3.1
60
82
8
225
36
16
13
33
1.87
149097--149172
31
2.5
31
82
8
93
35
7
14
42
1.75
154019--154073
11
5.1
11
76
10
51
47
5
0
47
1.25
153996--154074
32
2.5
31
82
8
97
46
5
0
48
1.24
160832--160869
14
2.7
14
88
8
51
39
2
0
57
1.12
169415--169463
2
25.0
2
95
4
91
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
171986--172023
18
2.1
18
90
9
60
50
18
2
28
1.61

Tables:   1

The End!