genome.fa.s3973.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003973.1 Hibiscus syriacus cultivar Beakdansim tig00008618_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60944

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70--143	30	2.5	31	85	12	102	43	4	28	24	1.72
5604--5687	43	2.0	41	81	11	98	34	11	3	50	1.57
7621--7672	21	2.5	21	87	6	70	23	23	21	32	1.98
7695--7762	20	3.3	20	72	11	57	27	13	22	36	1.91
7690--7767	41	1.9	40	86	2	111	30	11	21	35	1.89
7709--7767	21	2.9	21	82	2	75	30	10	25	33	1.89
8577--8620	3	14.7	3	100	0	88	34	0	0	65	0.93
8640--8672	17	1.9	17	88	11	50	66	0	0	33	0.92
9001--9025	8	3.1	8	100	0	50	60	0	0	40	0.97
9534--9621	10	8.1	10	69	16	50	59	18	9	13	1.60
9578--9621	23	1.9	23	90	0	70	63	20	4	11	1.44
9580--9630	23	2.2	23	82	6	59	64	23	3	7	1.37
17762--17798	20	1.9	19	89	10	58	48	10	21	18	1.78
18484--18536	23	2.3	23	90	0	79	41	16	16	24	1.89
18515--18660	73	2.0	73	95	0	265	39	18	13	28	1.89
18763--18818	30	1.9	28	92	7	94	39	0	8	51	1.33
19798--19872	34	2.2	34	95	0	132	29	5	6	58	1.46
19798--19891	34	2.7	34	88	3	107	30	5	5	58	1.43
20997--21064	23	3.0	23	70	8	66	22	23	5	48	1.72
23952--23991	20	2.0	21	95	5	73	42	5	5	47	1.47
23951--23996	20	2.4	19	86	10	67	45	4	4	45	1.43
30538--30577	15	2.7	15	96	0	71	12	30	45	12	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35345--35592	130	1.9	130	92	0	415	35	14	13	37	1.85
35359--35623	130	2.0	129	81	4	300	38	12	13	35	1.83
36780--37028	131	1.9	131	91	0	410	36	14	13	36	1.85
36794--37059	131	2.0	129	80	5	293	39	12	13	34	1.82
37355--37417	28	2.3	27	78	8	63	46	1	3	49	1.27
37497--37530	16	2.0	18	88	11	54	64	5	2	26	1.30
37653--37695	21	2.0	21	100	0	86	39	0	13	46	1.44
37664--37749	35	2.5	35	84	0	100	37	1	20	40	1.61
37880--37939	29	2.1	29	87	6	86	28	8	28	35	1.86
39043--39103	14	4.1	15	74	21	58	60	0	31	8	1.26
39036--39086	17	3.1	18	76	23	58	60	0	31	7	1.25
40225--40257	13	2.5	13	100	0	66	33	33	6	27	1.81
49054--49378	162	2.0	162	99	0	641	30	19	8	41	1.81
52297--52347	25	2.0	25	100	0	102	23	15	19	41	1.90
53506--53542	17	2.2	17	90	0	56	72	5	2	18	1.15
53652--53723	27	2.8	26	81	6	76	30	4	1	63	1.21
58525--58564	21	1.9	21	89	0	62	15	27	25	32	1.95

Tables:   1

The End!