genome.fa.s3975.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003975.1 Hibiscus syriacus cultivar Beakdansim tig00008632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91494

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7109--7142	2	17.0	2	100	0	68	50	0	0	50	1.00
18266--18350	34	2.5	34	98	0	161	37	1	29	31	1.65
20738--20779	2	21.0	2	100	0	84	50	0	0	50	1.00
24052--24131	41	2.0	41	100	0	160	35	7	13	43	1.73
26824--26933	3	36.7	3	88	0	166	30	1	2	65	1.17
28174--28222	19	2.7	18	87	9	73	16	4	6	73	1.19
28262--28296	12	2.8	13	91	8	56	42	0	0	57	0.99
28308--28336	13	2.3	13	94	5	51	27	0	0	72	0.85
28985--29034	18	2.8	18	79	8	59	26	0	2	72	0.96
29025--29061	15	2.7	15	88	12	53	24	5	8	62	1.44
39182--39230	15	3.1	15	82	8	53	75	0	18	6	1.00
40350--40866	167	3.1	167	98	1	973	27	14	21	36	1.92
40350--40866	251	2.1	251	97	1	966	27	14	21	36	1.92
40350--40866	84	6.2	84	97	1	968	27	14	21	36	1.92
41576--41868	113	2.6	114	90	1	437	38	12	20	28	1.89
41765--41965	97	2.1	97	99	0	393	37	13	18	29	1.90
41862--42452	114	5.2	114	96	0	1044	38	13	18	30	1.89
41651--42452	228	3.6	214	92	3	1119	38	13	18	30	1.89
42765--42890	3	42.0	3	91	0	207	30	1	2	65	1.15
43302--43345	22	2.0	22	81	0	52	68	6	25	0	1.14
44134--44182	19	2.7	18	87	9	73	16	4	6	73	1.19
44222--44256	12	2.8	13	91	8	56	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47850--47902	18	2.9	18	94	0	88	18	20	33	26	1.96
50886--50951	20	3.0	23	82	8	75	33	25	19	21	1.97
59284--59584	152	2.0	151	97	1	570	20	31	18	29	1.97
69170--69396	41	5.5	41	78	4	208	37	17	16	27	1.92
69178--69437	41	6.3	41	77	4	193	37	17	17	27	1.92
69170--69396	82	2.8	82	80	2	233	37	17	16	27	1.92
74093--74133	16	2.6	16	80	0	55	34	19	4	41	1.73
74584--74625	21	2.0	21	86	9	59	19	40	7	33	1.78
76283--76320	18	2.1	19	90	5	60	47	2	2	47	1.30
87218--87287	29	2.4	29	100	0	140	28	10	24	37	1.88

Tables:   1

The End!