genome.fa.s3977.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003977.1 Hibiscus syriacus cultivar Beakdansim tig00008636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174717

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3502--3534	2	16.5	2	93	0	57	45	0	0	54	0.99
13991--14402	202	2.0	203	95	0	745	25	8	22	42	1.82
18273--18318	23	2.0	23	86	0	65	19	23	26	30	1.98
30702--30815	59	1.9	59	83	11	146	50	3	0	45	1.18
30984--31017	16	2.1	17	88	5	52	52	5	0	41	1.25
30982--31026	17	2.6	18	82	13	58	51	6	0	42	1.28
37437--37511	39	1.9	39	91	0	123	45	8	5	41	1.56
38980--39042	2	31.5	2	100	0	126	50	0	0	49	1.00
42106--42166	30	2.0	30	90	6	97	14	21	32	31	1.93
42219--42303	34	2.5	34	94	0	143	15	23	24	36	1.93
42399--42442	23	1.9	23	95	0	79	11	25	38	25	1.89
42870--43229	173	2.1	173	93	2	607	38	4	18	38	1.71
45255--45495	37	6.3	37	86	9	340	49	5	4	39	1.47
45247--45448	23	8.7	22	72	17	115	49	5	4	39	1.49
45247--45537	14	20.8	14	69	14	122	50	5	4	40	1.44
45352--45537	8	25.4	8	66	22	70	51	4	2	41	1.37
45337--45546	74	2.9	72	83	11	263	50	4	3	40	1.40
45254--45483	119	1.9	118	90	5	365	50	5	4	39	1.47
48997--49084	42	2.1	42	95	0	158	28	34	21	15	1.94
50249--50324	36	2.1	37	92	2	127	39	6	17	36	1.75
50427--50503	31	2.5	31	82	0	91	49	10	12	27	1.74
52314--52435	51	2.4	51	84	0	163	29	13	21	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52421--52458	20	1.9	20	88	0	58	47	15	13	23	1.81
56159--56212	24	2.2	26	87	12	78	42	3	3	50	1.38
56363--56403	21	2.0	21	95	0	73	51	21	0	26	1.48
56379--56432	28	1.9	28	88	0	81	50	24	0	25	1.50
58467--58554	23	3.8	23	78	14	99	29	25	26	19	1.98
68537--68576	21	1.9	21	85	10	55	35	10	2	52	1.48
74562--74649	23	3.8	23	74	14	90	30	25	25	19	1.98
77231--77277	24	2.0	24	83	8	60	57	12	2	27	1.47
80579--80622	20	2.2	20	84	4	63	65	0	15	18	1.27
87470--87516	24	2.0	24	83	8	60	57	12	2	27	1.47
89969--89997	11	2.6	11	100	0	58	17	27	27	27	1.97
91489--91513	4	6.2	4	100	0	50	24	0	0	76	0.80
94819--94931	60	1.9	60	81	7	140	42	5	5	46	1.49
96958--97113	60	2.6	60	83	8	176	33	21	4	40	1.73
97241--97395	60	2.6	60	81	4	161	44	6	18	30	1.74
97296--97414	60	2.0	60	81	6	143	48	4	14	32	1.63
98139--98175	2	18.5	2	100	0	74	48	0	0	51	1.00
108540--108760	112	2.0	109	92	2	370	29	17	17	35	1.92
109420--109485	29	2.3	28	82	10	71	28	15	16	39	1.89
111183--111271	39	2.3	39	100	0	178	37	17	17	26	1.93
111328--111426	41	2.4	41	83	5	119	27	16	24	32	1.96
113647--113699	22	2.4	22	87	0	70	41	3	20	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118022--118058	17	2.2	17	100	0	74	59	10	16	13	1.61
118188--118250	28	2.3	28	94	2	110	25	14	26	33	1.94
118856--118891	2	18.0	2	100	0	72	50	0	0	50	1.00
121637--121702	33	2.1	31	88	8	98	36	25	15	22	1.93
122713--122869	64	2.5	63	83	8	176	33	17	22	27	1.96
124441--124509	25	2.8	25	97	0	129	17	27	26	28	1.97
124624--124668	23	2.0	23	86	0	63	20	26	26	26	1.99
140781--140816	3	12.0	3	100	0	72	66	0	0	33	0.92
146637--146679	2	21.5	2	100	0	86	48	0	0	51	1.00
147908--147957	15	3.4	15	73	15	59	42	2	8	48	1.44
147909--147972	29	2.2	29	83	8	76	45	1	7	45	1.42
149541--149570	2	15.0	2	92	0	51	3	46	0	50	1.18
151126--151182	28	2.0	28	89	0	87	31	19	17	31	1.95
152349--152407	29	2.0	29	100	0	118	23	13	13	49	1.78
157035--157093	29	2.0	29	96	0	109	22	13	15	49	1.79
159378--159421	2	21.5	2	86	4	61	50	0	2	47	1.13
162198--162284	35	2.5	34	78	12	88	55	10	6	27	1.59
163488--163533	20	2.3	20	92	0	74	50	10	2	36	1.50
168203--168268	21	3.2	21	62	12	55	19	21	28	30	1.98
168210--168276	21	3.2	21	63	12	57	20	22	28	28	1.99
168170--168366	83	2.4	84	85	0	270	23	25	24	26	2.00
168170--168441	42	6.5	42	81	2	278	24	23	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168316--168470	84	1.8	84	81	0	193	22	24	24	28	1.99

Tables:   1

The End!