genome.fa.s3979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003979.1 Hibiscus syriacus cultivar Beakdansim tig00008648_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55378

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128--152	11	2.3	11	100	0	50	68	0	0	32	0.90
3288--3573	45	6.5	45	91	4	442	39	7	19	32	1.81
4738--4791	27	2.0	27	92	0	90	50	16	9	24	1.74
6168--6635	55	8.6	55	84	7	557	30	25	16	28	1.96
6168--6650	161	3.0	162	83	8	549	30	25	15	28	1.96
6168--6635	110	4.3	110	86	6	621	30	25	16	28	1.96
6945--6977	17	1.9	17	88	11	50	30	27	3	39	1.72
8017--8102	14	5.8	14	73	22	52	6	17	1	74	1.10
8011--8184	16	10.8	15	69	22	90	8	17	0	73	1.11
8016--8057	7	5.7	7	86	8	57	9	14	0	76	1.02
8045--8087	19	2.3	19	91	0	68	9	18	0	72	1.11
17557--17661	45	2.3	46	93	3	176	40	20	7	30	1.81
19375--19428	27	2.0	27	88	0	81	51	16	7	24	1.69
21808--21846	3	13.0	3	84	10	53	61	2	0	35	1.10
21837--21872	16	2.2	17	95	5	65	72	5	0	22	1.05
24283--24375	21	4.6	20	74	4	78	39	17	23	19	1.92
24300--24375	21	3.7	20	75	5	80	40	18	23	17	1.91
24280--24375	41	2.3	41	92	0	165	40	16	22	19	1.91
24302--24436	41	3.3	41	80	6	114	38	20	20	20	1.94
24364--24457	20	4.7	20	80	2	89	34	24	18	23	1.96
25016--25060	19	2.4	19	92	0	72	48	26	15	8	1.74
25056--25164	19	5.7	19	90	2	155	13	20	20	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25056--25164	58	1.9	57	88	1	164	13	20	20	45	1.84
25056--25259	33	5.6	38	78	11	146	13	22	21	43	1.86
25202--25259	20	2.9	20	80	10	64	13	24	18	43	1.87
27258--27380	42	2.9	42	80	2	122	22	36	17	22	1.95
27314--27380	21	3.2	21	66	6	55	23	35	20	19	1.95
28736--28771	14	2.6	14	95	0	63	30	0	25	44	1.54
28878--28959	39	2.1	38	90	2	128	45	20	19	14	1.85
28878--28950	19	3.8	19	94	3	128	46	20	20	12	1.82
28955--29072	19	6.7	19	66	19	76	13	23	20	42	1.88
28959--29052	33	2.8	33	98	0	179	12	24	19	43	1.85
31340--31364	12	2.1	12	100	0	50	0	28	0	72	0.86
32888--32924	14	2.6	14	86	0	56	48	21	0	29	1.50
33349--33422	19	4.5	16	83	16	66	13	20	18	47	1.82
33345--33412	19	3.8	19	87	12	101	13	22	17	47	1.82
33529--33565	14	2.6	14	86	0	56	48	21	0	29	1.50
32464--33814	641	2.1	635	97	1	2555	35	19	12	32	1.89
35426--35492	19	3.5	19	83	4	89	37	23	23	14	1.93
35481--35538	14	3.9	14	79	16	71	48	25	17	8	1.75
35465--35543	32	2.4	33	95	2	142	46	24	18	10	1.80
35572--35629	14	3.9	14	77	16	62	8	18	24	48	1.76
35555--35645	32	2.8	33	93	3	157	10	19	21	47	1.80
35630--35684	20	2.8	19	83	8	65	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36157--36201	18	2.5	18	85	0	63	15	15	42	26	1.87
37521--37558	20	1.9	20	88	0	58	50	21	15	13	1.78
37821--37864	22	2.0	22	100	0	88	18	18	45	18	1.86
38052--38145	20	4.7	20	80	2	89	23	18	24	34	1.96
38072--38207	41	3.3	42	78	5	118	20	20	20	38	1.94
38032--38146	20	5.7	20	78	5	88	23	17	23	35	1.95
38135--38227	21	4.6	20	79	4	105	18	23	18	39	1.92
38135--38230	41	2.3	41	96	0	174	18	22	17	40	1.91
44501--44534	17	2.1	17	88	5	52	5	8	8	76	1.15
44560--44618	24	2.5	24	88	2	84	10	22	20	47	1.79
45005--45033	12	2.5	12	94	5	51	86	0	0	13	0.58
45562--45623	18	3.4	18	78	10	72	53	4	1	40	1.32
45562--45623	9	6.8	9	80	10	63	53	4	1	40	1.32
46023--46056	15	2.2	16	89	5	52	41	11	0	47	1.40
46346--46406	22	2.8	21	90	9	88	24	27	24	22	2.00
46866--46891	2	13.0	2	100	0	52	50	0	0	50	1.00
50373--50529	45	3.5	45	89	1	235	29	21	8	40	1.83
50501--50558	29	2.0	29	93	0	98	25	18	12	43	1.85
50456--50614	74	2.2	74	85	6	218	30	20	9	40	1.84
50410--50642	119	2.0	119	88	3	353	30	19	9	40	1.84
50531--50664	45	3.0	45	84	7	182	31	19	9	39	1.84
50539--50703	45	3.7	45	80	4	172	29	21	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50531--50703	90	1.9	90	84	0	229	30	21	10	38	1.87
50888--50953	33	2.0	33	100	0	132	39	18	6	36	1.75
51305--51424	54	2.2	54	93	0	213	24	24	19	32	1.97
55007--55090	43	2.0	43	87	0	123	21	3	23	51	1.64

Tables:   1

The End!