Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000398.1 Hibiscus syriacus cultivar Beakdansim tig00000731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 357049
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 3
Found at i:192296 original size:11 final size:11
Alignment explanation
Indices: 192293--192323 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
192283 AAGTAAAGAA
192293 AAAGAAAAAGC
1 AAAGAAAAAGC
192304 AAAGAAAAAGC
1 AAAGAAAAAGC
192315 AAAGAAAAA
1 AAAGAAAAA
192324 TAAAAGACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.77, C:0.06, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAGC
Found at i:192318 original size:22 final size:24
Alignment explanation
Indices: 192293--192341 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
192283 AAGTAAAGAA
*
192293 AAAGAAAAAGCAAAGA-AA-AAGC
1 AAAGAAAAAGAAAAGACAATAAGC
*
192315 AAAGAAAAATAAAAGACAATAAGC
1 AAAGAAAAAGAAAAGACAATAAGC
192339 AAA
1 AAA
192342 TGCAAAGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 14 0.61
23 2 0.09
24 7 0.30
ACGTcount: A:0.73, C:0.08, G:0.14, T:0.04
Consensus pattern (24 bp):
AAAGAAAAAGAAAAGACAATAAGC
Found at i:192329 original size:11 final size:11
Alignment explanation
Indices: 192287--192330 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
192277 GAAAAAAAGT
192287 AAAGAAAAAGAA
1 AAAG-AAAAGAA
*
192299 AAAGCAAAGAA
1 AAAGAAAAGAA
*
192310 AAAGCAAAGAA
1 AAAGAAAAGAA
*
192321 AAATAAAAGA
1 AAAGAAAAGA
192331 CAATAAGCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 25 0.86
12 4 0.14
ACGTcount: A:0.77, C:0.05, G:0.16, T:0.02
Consensus pattern (11 bp):
AAAGAAAAGAA
Found at i:193521 original size:37 final size:36
Alignment explanation
Indices: 193480--193590 Score: 132
Period size: 36 Copynumber: 3.1 Consensus size: 36
193470 TTGGGATTGA
* * *
193480 TTCTCTCGAAATAAATTTTATCTCACTTGAGACAGTT
1 TTCTCTCAAAACAAATTTCATCTCACTTGAGACA-TT
* * * *
193517 TTCTCTAAAAACAAACTTCATCTCACTTGAAACAAT
1 TTCTCTCAAAACAAATTTCATCTCACTTGAGACATT
* *
193553 TTCTCTCAAAACAAATTTCGTCTCGCTTGAGACATT
1 TTCTCTCAAAACAAATTTCATCTCACTTGAGACATT
193589 TT
1 TT
193591 TCCTTTAAGA
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
36 33 0.54
37 28 0.46
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (36 bp):
TTCTCTCAAAACAAATTTCATCTCACTTGAGACATT
Found at i:193564 original size:36 final size:37
Alignment explanation
Indices: 193480--193582 Score: 118
Period size: 37 Copynumber: 2.8 Consensus size: 37
193470 TTGGGATTGA
* * * * *
193480 TTCTCTCGAAATAAATTTTATCTCACTTGAGACAGTT
1 TTCTCTCAAAACAAATTTCATCTCACTTGAAACAGAT
* *
193517 TTCTCTAAAAACAAACTTCATCTCACTTGAAACA-AT
1 TTCTCTCAAAACAAATTTCATCTCACTTGAAACAGAT
* *
193553 TTCTCTCAAAACAAATTTCGTCTCGCTTGA
1 TTCTCTCAAAACAAATTTCATCTCACTTGA
193583 GACATTTTTC
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
36 27 0.49
37 28 0.51
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (37 bp):
TTCTCTCAAAACAAATTTCATCTCACTTGAAACAGAT
Found at i:194046 original size:36 final size:35
Alignment explanation
Indices: 194006--194184 Score: 89
Period size: 36 Copynumber: 5.4 Consensus size: 35
193996 CTTTGAGATC
194006 GTTTCCCTTGAAAAGAATTTTGTCTCTCATGAGACA
1 GTTTCCCTTGAAAAGAATTTTGTCTCTC-TGAGACA
* * ** *
194042 GTTTCTCTTG-AAA-CA--TCATCT-T-TGAGATA
1 GTTTCCCTTGAAAAGAATTTTGTCTCTCTGAGACA
* * *
194071 GTTTCCTTTTAAATGAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAAAGAATTTTGTCTCTC-TGAGACA
* * *
194107 GTTTCTCTTG-AAA-CA--TTATCT-T-TGAGATC-
1 GTTTCCCTTGAAAAGAATTTTGTCTCTCTGAGA-CA
*
194136 GTTTCCCTTGAAACA-AATTTTGTCTTTCTTGAGACA
1 GTTTCCCTTGAAA-AGAATTTTGTCTCTC-TGAGACA
* *
194172 ATTTCTCTTGAAA
1 GTTTCCCTTGAAA
194185 TAAATCCTTA
Statistics
Matches: 103, Mismatches: 24, Indels: 32
0.65 0.15 0.20
Matches are distributed among these distances:
29 27 0.26
30 5 0.05
31 5 0.05
32 9 0.09
33 9 0.09
34 4 0.04
35 6 0.06
36 38 0.37
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (35 bp):
GTTTCCCTTGAAAAGAATTTTGTCTCTCTGAGACA
Found at i:194089 original size:65 final size:65
Alignment explanation
Indices: 193932--194184 Score: 316
Period size: 65 Copynumber: 3.9 Consensus size: 65
193922 AAAAGAAAAC
* * * * **
193932 CTTTAAGATTGTTTCCCTTGAAACA-AGTTTTG--TCTCTTGAAACAATTTCTCTTGAAACAAAG
1 CTTTGAGATCGTTTCCCTTGAAA-AGAATTTTGTCTCTCTTGAGACAATTTCTCTTGAAAC-ATC
193994 AT
64 AT
* *
193996 CTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCTCATGAGACAGTTTCTCTTGAAACATCAT
1 CTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCTCTTGAGACAATTTCTCTTGAAACATCAT
* * * * * *
194061 CTTTGAGATAGTTTCCTTTTAAATGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATTAT
1 CTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCTCTTGAGACAATTTCTCTTGAAACATCAT
*
194126 CTTTGAGATCGTTTCCCTTGAAACA-AATTTTGTCTTTCTTGAGACAATTTCTCTTGAAA
1 CTTTGAGATCGTTTCCCTTGAAA-AGAATTTTGTCTCTCTTGAGACAATTTCTCTTGAAA
194185 TAAATCCTTA
Statistics
Matches: 165, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
63 1 0.01
64 27 0.16
65 114 0.69
66 23 0.14
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.42
Consensus pattern (65 bp):
CTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCTCTTGAGACAATTTCTCTTGAAACATCAT
Found at i:194469 original size:134 final size:134
Alignment explanation
Indices: 194233--194486 Score: 307
Period size: 134 Copynumber: 1.9 Consensus size: 134
194223 GAACCATGTT
* ** * * *
194233 ATCATCCCTAAAGATGGCCAACCGTCCTCATCATGTAGGAATCGTGTCATCCCTCTACCATATCT
1 ATCATCCCTAAAGATGGCCAACCATCCTCATCACATAGGAATCGTGTCATCCATCAACCAGATCT
* * * * **
194298 CCTCATCACGTATGAGCCGCGTCATCCCTAGATAACCAGCCATCCTCATCGCGTAAGAATTGTAT
66 CCTCATCACGTAGGAGCAGCGTCATCCCTAAACAACCAGAAATCCTCATCGCGTAAGAATTGTAT
194363 TATC
131 TATC
* * *
194367 ATCATCCTTAAAGATGGCCAACTATCCTCATCGCATAGGAA-CTGTGTCATCCATCAACCAGATC
1 ATCATCCCTAAAGATGGCCAACCATCCTCATCACATAGGAATC-GTGTCATCCATCAACCAGATC
* *
194431 TCCTCATCA-TTAGGAGCAGCGTCAT-CCTAAAAACAACCAGAAATCTTCATCGCGTA
65 TCCTCATCACGTAGGAGCAGCGTCATCCCT--AAACAACCAGAAATCCTCATCGCGTA
194487 TGAGCAATGT
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
132 3 0.03
133 14 0.14
134 83 0.83
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.26
Consensus pattern (134 bp):
ATCATCCCTAAAGATGGCCAACCATCCTCATCACATAGGAATCGTGTCATCCATCAACCAGATCT
CCTCATCACGTAGGAGCAGCGTCATCCCTAAACAACCAGAAATCCTCATCGCGTAAGAATTGTAT
TATC
Found at i:199400 original size:36 final size:36
Alignment explanation
Indices: 199360--199466 Score: 84
Period size: 36 Copynumber: 3.0 Consensus size: 36
199350 TTAGTTGGGA
199360 TGTTCTTCTATGTTTCTTAGCCATGTGAGATTGTTT
1 TGTTCTTCTATGTTTCTTAGCCATGTGAGATTGTTT
* * *
199396 TGTTC-TC-ATATTT-TTA-CTC-T-TTAGACTT-TTGGGA
1 TGTTCTTCTATGTTTCTTAGC-CATGTGAGA-TTGTT---T
*
199430 TGATCTTCTATGTTTCTTAGCCATGTGAGATTGTTT
1 TGTTCTTCTATGTTTCTTAGCCATGTGAGATTGTTT
199466 T
1 T
199467 TAAAAAAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 24
0.63 0.08 0.29
Matches are distributed among these distances:
31 6 0.12
32 4 0.08
33 4 0.08
34 9 0.17
35 4 0.08
36 11 0.21
37 4 0.08
38 4 0.08
39 6 0.12
ACGTcount: A:0.16, C:0.14, G:0.18, T:0.52
Consensus pattern (36 bp):
TGTTCTTCTATGTTTCTTAGCCATGTGAGATTGTTT
Found at i:205871 original size:24 final size:24
Alignment explanation
Indices: 205839--205887 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
205829 CGCTTTTTTC
205839 CAAAGCACTTTGTCCAACCTTCTG
1 CAAAGCACTTTGTCCAACCTTCTG
*
205863 CAAAGCACTTTGTCGAACCTTCTG
1 CAAAGCACTTTGTCCAACCTTCTG
205887 C
1 C
205888 TTTTACTGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (24 bp):
CAAAGCACTTTGTCCAACCTTCTG
Found at i:207862 original size:109 final size:109
Alignment explanation
Indices: 207667--207884 Score: 330
Period size: 109 Copynumber: 2.0 Consensus size: 109
207657 CCTTTGGCAT
* * * *
207667 TTGCATTGGGAAGAAAACTGAAGGAAGCATTAGACAGTAAAAAGTGTATGTAACTGCAATTTTAT
1 TTGCATTGGGAAGAAAACTGAAGGAAGCATTAGACAGCAAAAAGTGTATGAAACTGCAATTATAG
* *
207732 TTGATGGATGTAGTTGGGACTTCTACAGTTTACCAATTTGAAAA
66 TTGATGGATGTAGTTGAGACTTCTACACTTTACCAATTTGAAAA
* * *
207776 TTGCATTGGGAAGGAAACTGAAGGAAGCATTAGGCAGCAAAAAGTGTATGAAATTGCAATTATAG
1 TTGCATTGGGAAGAAAACTGAAGGAAGCATTAGACAGCAAAAAGTGTATGAAACTGCAATTATAG
*
207841 TTGATGGATG-ATGTTTAGACTTCTACACTTTACCAATTTGAAAA
66 TTGATGGATGTA-GTTGAGACTTCTACACTTTACCAATTTGAAAA
207885 AACACGTATG
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 1 0.01
109 97 0.99
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (109 bp):
TTGCATTGGGAAGAAAACTGAAGGAAGCATTAGACAGCAAAAAGTGTATGAAACTGCAATTATAG
TTGATGGATGTAGTTGAGACTTCTACACTTTACCAATTTGAAAA
Found at i:208624 original size:18 final size:18
Alignment explanation
Indices: 208598--208634 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
208588 TTATGATCCC
*
208598 TATATTACAAAATTTATT
1 TATAGTACAAAATTTATT
208616 TATAGTACAAAATTTATT
1 TATAGTACAAAATTTATT
208634 T
1 T
208635 TCTATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (18 bp):
TATAGTACAAAATTTATT
Found at i:208743 original size:18 final size:18
Alignment explanation
Indices: 208720--208760 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
208710 TTTTTAAGTA
208720 ATAATTAATAACTTAAAT
1 ATAATTAATAACTTAAAT
208738 ATAATT--TAACTTAAAT
1 ATAATTAATAACTTAAAT
208754 AT-ATTAA
1 ATAATTAA
208761 ACATAATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 3 0.14
16 12 0.57
18 6 0.29
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAATTAATAACTTAAAT
Found at i:209145 original size:22 final size:22
Alignment explanation
Indices: 209120--209178 Score: 118
Period size: 22 Copynumber: 2.7 Consensus size: 22
209110 AAACGAATTA
209120 CAGTCAACATTCAGATTAAGTC
1 CAGTCAACATTCAGATTAAGTC
209142 CAGTCAACATTCAGATTAAGTC
1 CAGTCAACATTCAGATTAAGTC
209164 CAGTCAACATTCAGA
1 CAGTCAACATTCAGA
209179 CCAAGTCTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (22 bp):
CAGTCAACATTCAGATTAAGTC
Found at i:209184 original size:22 final size:22
Alignment explanation
Indices: 209083--209185 Score: 109
Period size: 22 Copynumber: 4.7 Consensus size: 22
209073 ATCAATTCAT
* **
209083 CATTCAGATCAAATCCAACCAA
1 CATTCAGATCAAGTCCAGTCAA
* * *
209105 CATTCA-AACGAATTACAGTCAA
1 CATTCAGATC-AAGTCCAGTCAA
*
209127 CATTCAGATTAAGTCCAGTCAA
1 CATTCAGATCAAGTCCAGTCAA
*
209149 CATTCAGATTAAGTCCAGTCAA
1 CATTCAGATCAAGTCCAGTCAA
*
209171 CATTCAGACCAAGTC
1 CATTCAGATCAAGTC
209186 TAAACACTAT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
21 2 0.03
22 65 0.96
23 1 0.01
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (22 bp):
CATTCAGATCAAGTCCAGTCAA
Found at i:210243 original size:17 final size:18
Alignment explanation
Indices: 210204--210251 Score: 64
Period size: 17 Copynumber: 2.7 Consensus size: 18
210194 GCATCACAAG
210204 ACAACTTTTCAATTGCGA
1 ACAACTTTTCAATTGCGA
*
210222 A-AACTTTTCAATTG-TA
1 ACAACTTTTCAATTGCGA
210238 ACAACTTTATCAAT
1 ACAACTTT-TCAAT
210252 ATACCTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 2 0.07
17 19 0.70
18 6 0.22
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (18 bp):
ACAACTTTTCAATTGCGA
Found at i:210545 original size:15 final size:16
Alignment explanation
Indices: 210525--210624 Score: 62
Period size: 15 Copynumber: 5.8 Consensus size: 16
210515 AATATATATT
*
210525 AAATAAAA-AAGAGAA
1 AAATAAAATAAAAGAA
210540 AAATAAAATAAAAG-A
1 AAATAAAATAAAAGAA
210555 AAATAATGAATAAAAGAAAA
1 AAATAA--AATAAAAG--AA
210575 CAAATAAAAATATAAA-ACA
1 -AAAT-AAAATA-AAAGA-A
* *
210594 AATAAAAAATTGAAAGAA
1 AA-ATAAAA-TAAAAGAA
210612 AAATAAAATAAAA
1 AAATAAAATAAAA
210625 AACAAAAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 25
0.69 0.05 0.26
Matches are distributed among these distances:
15 15 0.22
16 8 0.12
17 13 0.19
18 13 0.19
19 4 0.06
20 5 0.07
21 7 0.10
22 2 0.03
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (16 bp):
AAATAAAATAAAAGAA
Found at i:210591 original size:8 final size:8
Alignment explanation
Indices: 210525--210635 Score: 50
Period size: 8 Copynumber: 13.4 Consensus size: 8
210515 AATATATATT
210525 AAAT-AAA
1 AAATAAAA
* *
210532 AAAGAGAA
1 AAATAAAA
210540 AAATAAAA
1 AAATAAAA
210548 TAAA-AGAAA
1 -AAATA-AAA
*
210557 ATAATGAATA
1 A-AAT-AAAA
*
210567 AAAGAAAA
1 AAATAAAA
210575 CAAATAAAA
1 -AAATAAAA
*
210584 ATATAAAA
1 AAATAAAA
210592 CAAATAAAA
1 -AAATAAAA
* *
210601 AATTGAAAG
1 AAAT-AAAA
*
210610 AAA-AATA
1 AAATAAAA
210617 AAATAAAA
1 AAATAAAA
210625 AACA-AAAA
1 AA-ATAAAA
210633 AAA
1 AAA
210636 GCATAAAACA
Statistics
Matches: 77, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
7 9 0.12
8 34 0.44
9 30 0.39
10 3 0.04
11 1 0.01
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.13
Consensus pattern (8 bp):
AAATAAAA
Found at i:210591 original size:17 final size:17
Alignment explanation
Indices: 210571--210647 Score: 70
Period size: 17 Copynumber: 4.5 Consensus size: 17
210561 TGAATAAAAG
210571 AAAACAAATAAAAATAT
1 AAAACAAATAAAAATAT
210588 AAAACAAATAAAAA-ATT
1 AAAACAAATAAAAATA-T
* *
210605 GAAAGAAAAAT-AAAATAA
1 -AAA-ACAAATAAAAATAT
*
210623 AAAACAAA-AAAAAGCAT
1 AAAACAAATAAAAA-TAT
210640 AAAACAAA
1 AAAACAAA
210648 AAACAAAAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
16 9 0.18
17 27 0.55
18 7 0.14
19 6 0.12
ACGTcount: A:0.78, C:0.06, G:0.04, T:0.12
Consensus pattern (17 bp):
AAAACAAATAAAAATAT
Found at i:212161 original size:107 final size:106
Alignment explanation
Indices: 211978--212171 Score: 293
Period size: 107 Copynumber: 1.8 Consensus size: 106
211968 CATAGACTTT
* *
211978 TATATATTATAAGTATAATGCATACTTATATTATATATTTATATAAGTATATACTTATAATGTTT
1 TATATATTATAAGTATAATGCATACTTATATTATATACTTATATAAGTATATACTTATAATGTAT
* *
212043 GTATAGGTATATATATATATATATACTTATACTTATGTATTA
66 GCATAAGTATATATATA-ATATATACTTATACTTATGTATTA
*
212085 TATATATTATAAGTATAATGTC-TACTTATATTATATACTTATATAAGTATATATTTATAATGTA
1 TATATATTATAAGTATAATG-CATACTTATATTATATACTTATATAAGTATATACTTATAATGTA
*
212149 TGCA-ACATTATATATATAATATA
65 TGCATA-AGTATATATATAATATA
212172 AGTATAATGT
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
106 6 0.08
107 72 0.91
108 1 0.01
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (106 bp):
TATATATTATAAGTATAATGCATACTTATATTATATACTTATATAAGTATATACTTATAATGTAT
GCATAAGTATATATATAATATATACTTATACTTATGTATTA
Found at i:214783 original size:12 final size:13
Alignment explanation
Indices: 214766--214795 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
214756 AGATAAAGAT
214766 TAAATAAAC-AAA
1 TAAATAAACAAAA
214778 TAAATAAACAAAA
1 TAAATAAACAAAA
214791 TAAAT
1 TAAAT
214796 TGAGATAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAATAAACAAAA
Found at i:215572 original size:21 final size:24
Alignment explanation
Indices: 215524--215576 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
215514 ATAGCCTTCA
215524 AAATCCTAAAAAAAAGGTAAAGAT
1 AAATCCTAAAAAAAAGGTAAAGAT
*
215548 -AATCCTAAAATAAA-G-AAA-AT
1 AAATCCTAAAAAAAAGGTAAAGAT
215568 AAATCCTAA
1 AAATCCTAA
215577 TTAAAATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 2 0.07
21 11 0.41
22 1 0.04
23 13 0.48
ACGTcount: A:0.62, C:0.11, G:0.08, T:0.19
Consensus pattern (24 bp):
AAATCCTAAAAAAAAGGTAAAGAT
Found at i:216560 original size:27 final size:27
Alignment explanation
Indices: 216524--216583 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
216514 CTTTTTTTTC
* *
216524 TTTTTTCTGTTCGAAACATTTAACA-T
1 TTTTTTCTGTTCGAAACAATGAACAGT
*
216550 TTTTTTGCTGTTTGAAACAATGAACAGT
1 TTTTTT-CTGTTCGAAACAATGAACAGT
216578 TTTTTT
1 TTTTTT
216584 TCGACTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 16 0.55
28 7 0.24
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52
Consensus pattern (27 bp):
TTTTTTCTGTTCGAAACAATGAACAGT
Found at i:225130 original size:12 final size:12
Alignment explanation
Indices: 225113--225137 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
225103 GATAAGAATA
225113 AAATAATTAAAT
1 AAATAATTAAAT
225125 AAATAATTAAAT
1 AAATAATTAAAT
225137 A
1 A
225138 TAAATAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATAATTAAAT
Found at i:227127 original size:22 final size:22
Alignment explanation
Indices: 227078--227160 Score: 98
Period size: 22 Copynumber: 3.8 Consensus size: 22
227068 GAGTCAAGGG
* *
227078 TCTATGTGGTCCTTTGGGAAAAA
1 TCTATGTGGTCCTTCGGG-ACAA
*
227101 TCTATGTGGTTCTTCGGGACAA
1 TCTATGTGGTCCTTCGGGACAA
227123 TCTATGTGGTCCTTCGGGACAA
1 TCTATGTGGTCCTTCGGGACAA
*
227145 -ATATGTGG-CACTTCGG
1 TCTATGTGGTC-CTTCGG
227161 TGCAAATTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
20 1 0.02
21 13 0.24
22 24 0.44
23 16 0.30
ACGTcount: A:0.20, C:0.18, G:0.28, T:0.34
Consensus pattern (22 bp):
TCTATGTGGTCCTTCGGGACAA
Found at i:242727 original size:2 final size:2
Alignment explanation
Indices: 242720--242747 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
242710 AATACTATGG
242720 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
242748 GAAGTTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:242972 original size:27 final size:27
Alignment explanation
Indices: 242934--242994 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
242924 AATATATGAT
* * *
242934 AATGCTATGTG-ACAATGTTCTACGTGA
1 AATGTTATGTGAAC-ATGTGCTAAGTGA
242961 AATGTTATGTGAACATGTGCTAAGTGA
1 AATGTTATGTGAACATGTGCTAAGTGA
242988 ATATGTT
1 A-ATGTT
242995 CTATGGAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (27 bp):
AATGTTATGTGAACATGTGCTAAGTGA
Found at i:243189 original size:23 final size:23
Alignment explanation
Indices: 243159--243228 Score: 104
Period size: 23 Copynumber: 3.0 Consensus size: 23
243149 GAATCGAGGG
*
243159 TCTATGTGGTCCTTTGGGAAAAA
1 TCTATGTGGTCCTTCGGGAAAAA
*
243182 TCTATGTGGTTCTTCGGGAAAAA
1 TCTATGTGGTCCTTCGGGAAAAA
* *
243205 TCTATATGGTCCTTCAGGAAAAA
1 TCTATGTGGTCCTTCGGGAAAAA
243228 T
1 T
243229 ATGTGGCACT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (23 bp):
TCTATGTGGTCCTTCGGGAAAAA
Found at i:259182 original size:15 final size:13
Alignment explanation
Indices: 259148--259172 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
259138 TTACAGACGC
259148 GCATATGAAGACT
1 GCATATGAAGACT
259161 GCATATGAAGAC
1 GCATATGAAGAC
259173 CGTTCATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (13 bp):
GCATATGAAGACT
Found at i:259611 original size:16 final size:15
Alignment explanation
Indices: 259586--259616 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
259576 AATCACTTAA
259586 TTTATTAAAAAATAAT
1 TTTA-TAAAAAATAAT
259602 TTTATAAAAAATAAT
1 TTTATAAAAAATAAT
259617 CAGTTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TTTATAAAAAATAAT
Found at i:259946 original size:177 final size:175
Alignment explanation
Indices: 259594--259956 Score: 640
Period size: 177 Copynumber: 2.1 Consensus size: 175
259584 AATTTATTAA
*
259594 AAAATAATTTTATAAAAAATAATCAGTTAAAATAATGAAAATAAGTTTTATTATTTTCTATTTAT
1 AAAATAAATTTATAAAAAATAATCAGTTAAAATAATGAAAATAAGTTTTATTATTTTCTATTTAT
*
259659 TTTACATTTTTTTTAAAAATTTGTTTAAAATTTTAACCAAACATGATTTTTAAGTGTTTTCATTT
66 TATACATTTTTTTTAAAAATTTGTTTAAAATTTTAACCAAACATGATTTTTAAGTGTTTTCATTT
259724 CTTAAGAAAATTAAAATGAAAATGGTCTTTGTCTAACTATTTTTT
131 CTTAAGAAAATTAAAATGAAAATGGTCTTTGTCTAACTATTTTTT
259769 AAAATAAATTTAT-AAAAA-AATCAGTTAAAATAATGAAAATAAGTTTTATTATTTTCTATTTAT
1 AAAATAAATTTATAAAAAATAATCAGTTAAAATAATGAAAATAAGTTTTATTATTTTCTATTTAT
**
259832 TACATATTTTTTTTTTAAAAATTTGTTTAAAATTTTCAACCAAACATGATTTTTAAGTGTTTTTC
66 T--ATACATTTTTTTTAAAAATTTGTTTAAAATTTT-AACCAAACATGATTTTTAAGTG-TTTTC
259897 ATTTCTTAAGAAAATTAAAATGAAAATGGTCTTTGTCTAACTATTTTTT
127 ATTTCTTAAGAAAATTAAAATGAAAATGGTCTTTGTCTAACTATTTTTT
259946 AAAATAAATTT
1 AAAATAAATTT
259957 TCAGATATTA
Statistics
Matches: 180, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
173 46 0.26
174 5 0.03
175 42 0.23
176 22 0.12
177 65 0.36
ACGTcount: A:0.41, C:0.06, G:0.07, T:0.46
Consensus pattern (175 bp):
AAAATAAATTTATAAAAAATAATCAGTTAAAATAATGAAAATAAGTTTTATTATTTTCTATTTAT
TATACATTTTTTTTAAAAATTTGTTTAAAATTTTAACCAAACATGATTTTTAAGTGTTTTCATTT
CTTAAGAAAATTAAAATGAAAATGGTCTTTGTCTAACTATTTTTT
Found at i:263229 original size:15 final size:16
Alignment explanation
Indices: 263209--263249 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
263199 TTATTCAATA
263209 TTATTAATATTT-TAT
1 TTATTAATATTTGTAT
263224 TTATT-ATATTTGTAT
1 TTATTAATATTTGTAT
* *
263239 TAATAAATATT
1 TTATTAATATT
263250 ATTACAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 6 0.27
15 11 0.50
16 5 0.23
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TTATTAATATTTGTAT
Found at i:264538 original size:20 final size:19
Alignment explanation
Indices: 264513--264551 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
264503 ATTATTGCAA
264513 TATATTTTATTATTATTTAT
1 TATATTTTATTA-TATTTAT
*
264533 TATATTTTTTTATATTTAT
1 TATATTTTATTATATTTAT
264552 ATAAATAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (19 bp):
TATATTTTATTATATTTAT
Found at i:264675 original size:18 final size:17
Alignment explanation
Indices: 264634--264671 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
264624 AAATATCCTA
264634 TTTTAATTATATATTAT
1 TTTTAATTATATATTAT
264651 TTTTAATTAT-TATTTAT
1 TTTTAATTATATA-TTAT
264668 TTTT
1 TTTT
264672 TAATATCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTAATTATATATTAT
Found at i:265296 original size:34 final size:37
Alignment explanation
Indices: 265253--265325 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
265243 AATTCTTTTA
265253 TTTCAAAA-TTT-TTA-TTACTTATTTTTCATAATAT
1 TTTCAAAATTTTATTACTTACTTATTTTTCATAATAT
265287 TTTCAAAATTTTATTACTTACTTATTTTTCATAATAT
1 TTTCAAAATTTTATTACTTACTTATTTTTCATAATAT
265324 TT
1 TT
265326 ATTATATTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
34 8 0.22
35 3 0.08
36 3 0.08
37 22 0.61
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (37 bp):
TTTCAAAATTTTATTACTTACTTATTTTTCATAATAT
Found at i:266827 original size:8 final size:7
Alignment explanation
Indices: 266803--266843 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
266793 TTTTCATACA
266803 TGCA-TT
1 TGCATTT
266809 TGCATTT
1 TGCATTT
266816 TGCATCTT
1 TGCAT-TT
266824 TGCATTT
1 TGCATTT
*
266831 T-CATTG
1 TGCATTT
266837 TGCATTT
1 TGCATTT
266844 ACTCTTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
6 9 0.30
7 14 0.47
8 7 0.23
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.54
Consensus pattern (7 bp):
TGCATTT
Found at i:266917 original size:12 final size:12
Alignment explanation
Indices: 266900--266947 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
266890 ACATTCATAT
266900 ATTTACATTTGC
1 ATTTACATTTGC
266912 ATTTACATTTGC
1 ATTTACATTTGC
* *
266924 ATTTTTACGTTTGT
1 A--TTTACATTTGC
266938 ATTTACATTT
1 ATTTACATTT
266948 TCATATTTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 21 0.68
14 10 0.32
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.56
Consensus pattern (12 bp):
ATTTACATTTGC
Found at i:269825 original size:17 final size:18
Alignment explanation
Indices: 269786--269832 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
269776 AAAGAAAGAA
269786 AAAAAAGAAAAAATGATG
1 AAAAAAGAAAAAATGATG
*
269804 -AAAAAGGAAAAATGA-G
1 AAAAAAGAAAAAATGATG
*
269820 AAAAAATAAAAAA
1 AAAAAAGAAAAAA
269833 AAAAAGGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 1 0.04
17 24 0.96
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.09
Consensus pattern (18 bp):
AAAAAAGAAAAAATGATG
Found at i:269830 original size:16 final size:17
Alignment explanation
Indices: 269786--269831 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
269776 AAAGAAAGAA
269786 AAAAAAGAAAAAATGATG
1 AAAAAAG-AAAAATGATG
*
269804 AAAAAGGAAAAATGA-G
1 AAAAAAGAAAAATGATG
*
269820 AAAAAATAAAAA
1 AAAAAAGAAAAA
269832 AAAAAAGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 11 0.44
17 8 0.32
18 6 0.24
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (17 bp):
AAAAAAGAAAAATGATG
Found at i:273259 original size:76 final size:76
Alignment explanation
Indices: 273099--273275 Score: 182
Period size: 76 Copynumber: 2.3 Consensus size: 76
273089 TCAGAAGCAG
* * *
273099 ATATTGGGGCA-GACTGAAAGCCCATTTCAATTAGAATCAGAAATGTTGATGTATTCTGAACATT
1 ATATTGGGGCATG-CTGAAAACCCATTTCAATCAGAATAAGAAATGTTGATGTATTCTGAACATT
273163 TATATCAGCAAA
65 TATATCAGCAAA
* * * *
273175 ATGTTGGGGCATGCTGAAAACCC-TTTCAATCAGAATTAAG-AATGTTGAGGTTTTTTTTGAACA
1 ATATTGGGGCATGCTGAAAACCCATTTCAATCAGAA-TAAGAAATGTTGA--TGTATTCTGAACA
* * *
273238 TTTGTATTAGC-CA
63 TTTATATCAGCAAA
* *
273251 ATATTGGGGCATGTTGAAAGCCCAT
1 ATATTGGGGCATGCTGAAAACCCAT
273276 ATTATCCTGT
Statistics
Matches: 83, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
75 19 0.23
76 43 0.52
77 21 0.25
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (76 bp):
ATATTGGGGCATGCTGAAAACCCATTTCAATCAGAATAAGAAATGTTGATGTATTCTGAACATTT
ATATCAGCAAA
Found at i:274605 original size:22 final size:22
Alignment explanation
Indices: 274543--274615 Score: 103
Period size: 22 Copynumber: 3.4 Consensus size: 22
274533 TACATTCTTC
* *
274543 AAAGATGATAGATTTTCTCTTA
1 AAAGATGATAGATTCTCTTTTA
274565 AAAGATGATAGATTCTCTTTTA
1 AAAGATGATAGATTCTCTTTTA
*
274587 AAAGATGACAGATTCTCTTTT-
1 AAAGATGATAGATTCTCTTTTA
*
274608 CAAGATGA
1 AAAGATGA
274616 AAGCTTTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
21 7 0.15
22 40 0.85
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (22 bp):
AAAGATGATAGATTCTCTTTTA
Found at i:275365 original size:75 final size:76
Alignment explanation
Indices: 275268--275496 Score: 356
Period size: 76 Copynumber: 3.1 Consensus size: 76
275258 CTATTTCCCA
*
275268 CATCTGTAAGTCCTACAGTGCATGATG-TTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTTAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
275332 AACCTTCGGGC
66 AACCTTCGGGT
* * * * *
275343 CATCTGTATGTACTGCAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGTTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
275408 AGCCTTAGGGT
66 AACCTTCGGGT
275419 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAA-CCTTCGGGAGC-TTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
275482 AACCTTCGGGT
66 AACCTTCGGGT
275493 CATC
1 CATC
275497 AGCATTACCA
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
74 28 0.20
75 33 0.24
76 76 0.55
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AACCTTCGGGT
Found at i:275742 original size:112 final size:112
Alignment explanation
Indices: 275494--276012 Score: 573
Period size: 112 Copynumber: 4.8 Consensus size: 112
275484 CCTTCGGGTC
* *
275494 ATCAGCATTACCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAG--GAAGAAGTTTATA
1 ATCAGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATA
* * ** *
275557 AT-AGAAGAACTTGTTCAACC-TTTACTTTAATTCATCACTCGATGG
66 ATGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGG
*
275602 ATCAGCATTGCCAGGTCA-AGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 ATCAGCATTGCCAGGT-AGAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAGAAGTTCA
* * * * * * * *
275666 TAATGAGAATAACTTGTTCAACATTTTGTTTAAATTCATCATTTGATGG
64 TAATGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGG
* **
275715 ATCA-CATTGCCAGGTAGAGTTCATAATGAGAA-AACTCGTCATCTA-AAGAAGAAGAAGTTCAT
1 ATCAGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATC-TGAAGAAGAAGAAGAAGTTCAT
275777 AATGA-AAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGG
65 AATGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGG
* * * * * *
275824 ATTAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTTATCTGAAGAAGGAAGAAAAAGTTCA
1 ATCAGCATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAGAAGTTCA
*
275888 TAATGAAAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCA-T---T-G
64 TAATGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGG
* *
275932 AT--GGA-T-CCA-G-AGAGTTCATAATGAGAAGAACTTATCTGAAGAAGAAGAA-AA-TTCATA
1 ATCAGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATA
275989 ATGAGAAGAGCTT-TTCAACCTTTT
66 ATGAGAAGAGCTTGTTCAACCTTTT
276013 ATCTAGAAGT
Statistics
Matches: 362, Mismatches: 35, Indels: 38
0.83 0.08 0.09
Matches are distributed among these distances:
98 11 0.03
99 18 0.05
100 2 0.01
101 6 0.02
102 33 0.09
104 3 0.01
105 1 0.00
106 1 0.00
108 48 0.13
109 40 0.11
110 45 0.12
111 33 0.09
112 63 0.17
113 58 0.16
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.29
Consensus pattern (112 bp):
ATCAGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATA
ATGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGG
Found at i:275861 original size:222 final size:221
Alignment explanation
Indices: 275494--276013 Score: 644
Period size: 222 Copynumber: 2.4 Consensus size: 221
275484 CCTTCGGGTC
*
275494 ATCAGCATTACCAGGTAGAGTTCATAATGAGAAGAA--CTCATCTGAAGAAGGAAGAAGTTTATA
1 ATCA-CATT-CCAGGTAGAGTTCATAATGAGAAGAACTCTCATCTGAAGAA-GAAGAAGTTCATA
* ** * *
275557 AT-AGAAGAACTTGTTCAACC-TTTACTTTAATTCATCACTCGATGGATCAGCATTGCCAGGTCA
63 ATGAGAAGAGCTTGTTCAACCTTTTACTCAAATCCATCACTCGATGGATCAGCATTGCCAGGTAA
* * * *
275620 AGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAATAACTTGTTC
128 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATGAAAAGAACTTGTTC
* * *
275685 AACATTTTGTTTAAATTCATCATTTGATGG
193 AACATTTTGCTCAAATCCATCA-TTGATGG
*
275715 ATCACATTGCCAGGTAGAGTTCATAATGAGAA-AACTCGTCATCTAAAGAAGAAGAAGTTCATAA
1 ATCACATT-CCAGGTAGAGTTCATAATGAGAAGAACTC-TCATCTGAAGAAGAAGAAGTTCATAA
* * * *
275779 TGA-AAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATTAGCTTTTCCAGAG-AA
64 TGAGAAGAGCTTGTTCAACCTTTTACTCAAATCCATCACTCGATGGATCAGCATTGCCAG-GTAA
* *
275842 AGTTCATAATGAGAAGAACTTATCTGAAGAAGGAAGAAAAAGTTCATAATGAAAAGAGCTTGTTC
128 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATGAAAAGAACTTGTTC
*
275907 AACCTTTTGCTCAAATCCATCATTGATGG
193 AACATTTTGCTCAAATCCATCATTGATGG
*
275936 -----A-TCCA-G-AGAGTTCATAATGAGAAGAACT-T-ATCTGAAGAAGAAGAAAATTCATAAT
1 ATCACATTCCAGGTAGAGTTCATAATGAGAAGAACTCTCATCTGAAGAAGAAG-AAGTTCATAAT
275991 GAGAAGAGCTT-TTCAACCTTTTA
65 GAGAAGAGCTTGTTCAACCTTTTA
276014 TCTAGAAGTC
Statistics
Matches: 265, Mismatches: 25, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
210 13 0.05
211 24 0.09
212 25 0.09
213 5 0.02
214 3 0.01
215 1 0.00
216 1 0.00
219 2 0.01
220 27 0.10
221 41 0.15
222 122 0.46
223 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (221 bp):
ATCACATTCCAGGTAGAGTTCATAATGAGAAGAACTCTCATCTGAAGAAGAAGAAGTTCATAATG
AGAAGAGCTTGTTCAACCTTTTACTCAAATCCATCACTCGATGGATCAGCATTGCCAGGTAAAGT
TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATGAAAAGAACTTGTTCAAC
ATTTTGCTCAAATCCATCATTGATGG
Found at i:276509 original size:110 final size:111
Alignment explanation
Indices: 276214--276640 Score: 447
Period size: 110 Copynumber: 3.8 Consensus size: 111
276204 AGATAGATCA
* * *
276214 GCATTAACATTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTC
1 GCATCAACATTTCCAG-AAGAGTTCATAATGAGAAGAACTCATATGAAG-AGGAAGAAGAAGTTC
* * *
276279 ATAATGAGAAGAACTTATTCAACCTTTTGCTCGAATTCATCATTCGAT
64 ATAATGAGAAGAACTTAGTCAACCTTTTGCTTGAATTCATCAATCGAT
* * * * *
276327 GGATCATCGTTGCCAGAAG-GTTCATAATGAGAAGAACTTATATGAAGAGGAAGAAGAAGTTCAT
1 GCATCAACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATATGAAGAGGAAGAAGAAGTTCAT
* *
276391 AATGAGAAGAGCTT-GTCAACCTTTTGCTTG-ACTCTAT-AGATC-A-
66 AATGAGAAGAACTTAGTCAACCTTTTGCTTGAATTC-ATCA-ATCGAT
* * * * * *
276434 GCATTAACATTTCCAGTTAGAGTTCATAATGAGAAGAACTCATATGAAGAAGAAAGAAAAAATCC
1 GCATCAACATTTCCAG-AAGAGTTCATAATGAGAAGAACTCATATGAAG-AGGAAGAAGAAGTTC
* * * * * *
276499 ATAATAAGAAGAATTTGGTAAAACCTTTTGTTTGAATTCATCATTCGAT
64 ATAATGAGAAGAACTTAGT-CAACCTTTTGCTTGAATTCATCAATCGAT
* * * *
276548 GGATCAACTTTTCCAG-AGAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCA
1 GCATCAACATTTCCAGAAG-AGTTCATAATGAGAAGAACTCATATGAAGAGGAAGAAGAAGTTCA
*
276612 TAATGAGAAGAGCTT-GTTCAACCTTTTGC
65 TAATGAGAAGAACTTAG-TCAACCTTTTGC
276641 ATAAGGAGAT
Statistics
Matches: 256, Mismatches: 45, Indels: 28
0.78 0.14 0.09
Matches are distributed among these distances:
107 11 0.04
108 7 0.03
109 45 0.18
110 54 0.21
111 38 0.15
112 45 0.18
113 43 0.17
114 13 0.05
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (111 bp):
GCATCAACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATATGAAGAGGAAGAAGAAGTTCAT
AATGAGAAGAACTTAGTCAACCTTTTGCTTGAATTCATCAATCGAT
Found at i:276685 original size:222 final size:220
Alignment explanation
Indices: 276197--276698 Score: 675
Period size: 222 Copynumber: 2.3 Consensus size: 220
276187 GACTCTATCA
* *
276197 CATAAGAAGATAGATCAGCATTAACATTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAA
1 CATAAGAAGATAGATCAGCATTAACATTTCCAGAAAGAGTTCATAATGAGAAGAACTCATATGAA
* * * * * **
276262 GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGAATTCATCATTCGAT
66 GAAGAAAGAAAAAATCCATAATAAGAAGAACTTATAAAACCTTTTGCTCGAATTCATCATTCGAT
* *
276327 GGATCATCGTTGCCAGAAGGTTCATAATGAGAAGAACTTATATGAAGAGGAAGAAGAAGTTCATA
131 GGATCAACGTTGCCAGAAAGTTCATAATGAGAAGAACTTATATGAAGAGGAAGAAGAAGTTCATA
276392 ATGAGAAGAGCTTGTCAACCTTTTG
196 ATGAGAAGAGCTTGTCAACCTTTTG
* * **** **
276417 CTTGACTCTATAGATCAGCATTAACATTTCCAGTTAGAGTTCATAATGAGAAGAACTCATATGAA
1 CATAAGAAGATAGATCAGCATTAACATTTCCAGAAAGAGTTCATAATGAGAAGAACTCATATGAA
* * * *
276482 GAAGAAAGAAAAAATCCATAATAAGAAGAATTTGGTAAAACCTTTTGTTTGAATTCATCATTCGA
66 GAAGAAAGAAAAAATCCATAATAAGAAGAACTT-ATAAAACCTTTTGCTCGAATTCATCATTCGA
* * *
276547 TGGATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCA
130 TGGATCAACGTTGCCAGA-AAGTTCATAATGAGAAGAACTTATATGAAGAGGAAGAAGAAGTTCA
276612 TAATGAGAAGAGCTTGTTCAACCTTTTG
194 TAATGAGAAGAGCTTG-TCAACCTTTTG
* * * * *
276640 CATAAGGAGATAGA-CTAGCATCAACATTTTCAG-AAGTGCTCATAATGAGAAGAACTCAT
1 CATAAGAAGATAGATC-AGCATTAACATTTCCAGAAAGAGTTCATAATGAGAAGAACTCAT
276699 CTAAAGAATA
Statistics
Matches: 241, Mismatches: 37, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
220 82 0.34
221 41 0.17
222 84 0.35
223 34 0.14
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (220 bp):
CATAAGAAGATAGATCAGCATTAACATTTCCAGAAAGAGTTCATAATGAGAAGAACTCATATGAA
GAAGAAAGAAAAAATCCATAATAAGAAGAACTTATAAAACCTTTTGCTCGAATTCATCATTCGAT
GGATCAACGTTGCCAGAAAGTTCATAATGAGAAGAACTTATATGAAGAGGAAGAAGAAGTTCATA
ATGAGAAGAGCTTGTCAACCTTTTG
Found at i:277807 original size:11 final size:11
Alignment explanation
Indices: 277791--277819 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
277781 TCTCTCATTT
277791 GAGAGAAAGAA
1 GAGAGAAAGAA
277802 GAGAGAAAGAA
1 GAGAGAAAGAA
277813 GAGAGAA
1 GAGAGAA
277820 GAAAAATGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (11 bp):
GAGAGAAAGAA
Found at i:278295 original size:18 final size:15
Alignment explanation
Indices: 278272--278308 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
278262 TTATTTGCAA
278272 TATTATT-TTATTATT
1 TATTATTATTATT-TT
278287 TATTATTATTATTTT
1 TATTATTATTATTTT
278302 TATTATT
1 TATTATT
278309 TATATAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TATTATTATTATTTT
Found at i:278527 original size:119 final size:117
Alignment explanation
Indices: 278389--278618 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 117
278379 TAATAATCAT
* * * *
278389 TTTTTAATATATTATTTATTTTTCAATAT-TAAG-AAAG-GGTAGTCTTAAAACAACTGGATGTC
1 TTTTTAATATATTATTTATTTTTCAATATCAAAGAAAAGAGCT-GTCTTAAAACAACTAGAAGTC
*
278451 CATTTTCTGATATTTTTAAATAAATAAATATCATATTTTATAAATTATATATTATTA
65 C-TTTTCTGATATTTCTAAATAAATAAATAT--TATTTTATAAA-TATATATTATTA
* ** *
278508 TTTTTAAT-TATTTATTTATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGTC
1 TTTTTAATATA-TTATTTATTTTTCAATATCAAAGAAAAGAGCTGTCTTAAAACAACTAGAAGTC
*
278572 CTTTTCTGATATTTCTAAATAAATAAATATTTTTTTATAAATATATA
65 CTTTTCTGATATTTCTAAATAAATAAATATTATTTTATAAATATATA
278619 AATTAATATA
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
117 6 0.06
118 12 0.12
119 25 0.26
120 31 0.32
121 21 0.22
122 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.47
Consensus pattern (117 bp):
TTTTTAATATATTATTTATTTTTCAATATCAAAGAAAAGAGCTGTCTTAAAACAACTAGAAGTCC
TTTTCTGATATTTCTAAATAAATAAATATTATTTTATAAATATATATTATTA
Found at i:278645 original size:26 final size:26
Alignment explanation
Indices: 278590--278644 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
278580 ATATTTCTAA
* *
278590 ATAAATAAATATTTTTTTATAAATAT
1 ATAAATAAATATATTTTCATAAATAT
*
278616 ATAAATTAATATATATTTTCATAATTAT
1 ATAAA-TAA-ATATATTTTCATAAATAT
278644 A
1 A
278645 ATTTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.21
27 3 0.12
28 16 0.67
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
ATAAATAAATATATTTTCATAAATAT
Found at i:280235 original size:71 final size:71
Alignment explanation
Indices: 280126--280260 Score: 189
Period size: 71 Copynumber: 1.9 Consensus size: 71
280116 ATCCGTAATA
* * * * * * *
280126 AATTACCAGTTTGATCGGTTTTAACCTATACAAGGAATTACCAGTTTGGTCAAGTTGAACCTGCC
1 AATTACCAGTTCGATCGGTCTAAACCTATAAAAAGAATTACCAGTTTGATCAAGCTGAACCTGCC
280191 GTAAGG
66 GTAAGG
* *
280197 AATTACCTGTTCGATCGGTCTAAACCTATAAAAAGAATTACCAGTTTGATCGAGCTGAACCTGC
1 AATTACCAGTTCGATCGGTCTAAACCTATAAAAAGAATTACCAGTTTGATCAAGCTGAACCTGC
280261 AAAGACTTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
71 55 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (71 bp):
AATTACCAGTTCGATCGGTCTAAACCTATAAAAAGAATTACCAGTTTGATCAAGCTGAACCTGCC
GTAAGG
Found at i:280258 original size:35 final size:35
Alignment explanation
Indices: 280126--280258 Score: 108
Period size: 35 Copynumber: 3.8 Consensus size: 35
280116 ATCCGTAATA
* * *
280126 AATTACCAGTTTGATCGGTTTTAACCTATACAAGG
1 AATTACCAGTTTGATCGGTCTGAACCTATAAAAGG
* * ****
280161 AATTACCAGTTTGGTCAAGT-TGAACCTGCCGTAAGG
1 AATTACCAGTTTGATC-GGTCTGAACCT-ATAAAAGG
* * * *
280197 AATTACCTGTTCGATCGGTCTAAACCTATAAAAAG
1 AATTACCAGTTTGATCGGTCTGAACCTATAAAAGG
280232 AATTACCAGTTTGATCGAG-CTGAACCT
1 AATTACCAGTTTGATCG-GTCTGAACCT
280259 GCAAAGACTT
Statistics
Matches: 74, Mismatches: 20, Indels: 8
0.73 0.20 0.08
Matches are distributed among these distances:
35 48 0.65
36 26 0.35
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30
Consensus pattern (35 bp):
AATTACCAGTTTGATCGGTCTGAACCTATAAAAGG
Found at i:282634 original size:16 final size:17
Alignment explanation
Indices: 282613--282652 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
282603 AGGCTAGGGT
282613 TTGGGGAAATT-GAAAA
1 TTGGGGAAATTGGAAAA
*
282629 TTGGGGAATTTGGGAAAA
1 TTGGGGAAATT-GGAAAA
282647 TTGGGG
1 TTGGGG
282653 GAGTTAACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.48
18 11 0.52
ACGTcount: A:0.33, C:0.00, G:0.40, T:0.28
Consensus pattern (17 bp):
TTGGGGAAATTGGAAAA
Found at i:284807 original size:65 final size:63
Alignment explanation
Indices: 284738--284897 Score: 205
Period size: 65 Copynumber: 2.5 Consensus size: 63
284728 AATTAAATTG
* * *
284738 AACATCGAAAGCATTTCATGCATCGATGCACATACCATGCACCGATGCACTGAGGAT-TTTATGA
1 AACATCGAATGCATTTGATGCATCGATGCACA-ACCATGCACCGATGCACTCAGGATATTT-TG-
284802 A
63 A
* * * *
284803 AACATCGAATGCATTTGATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCATTTGATGCATCGATGCA-CAACCATGCACCGATGCACTCAGGATATTTTGA
*
284867 AACATCGAATGCACTTGATGCATCGATGCAC
1 AACATCGAATGCATTTGATGCATCGATGCAC
284898 TCTTAGTGCA
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
63 1 0.01
64 30 0.35
65 49 0.58
66 5 0.06
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (63 bp):
AACATCGAATGCATTTGATGCATCGATGCACAACCATGCACCGATGCACTCAGGATATTTTGA
Found at i:292367 original size:64 final size:62
Alignment explanation
Indices: 292299--292457 Score: 203
Period size: 64 Copynumber: 2.5 Consensus size: 62
292289 AATTAAATTG
* *
292299 AACATCGAATGCATTTCATGCATCGATGCACATACCATGCACCGATGCACTGAGG-ATTTATAAA
1 AACATCGAATGCATTTGATGCATCGATGCACA-ACCATGCACCGATGCACTCAGGCATTT-T-AA
* * * *
292363 AACATCGAATGCATTTGATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCATTTGATGCATCGATGCA-CAACCATGCACCGATGCACTCAGGC-ATTTTAA
*
292427 AACATCGAATGCATTTGATGCATCGGTGCAC
1 AACATCGAATGCATTTGATGCATCGATGCAC
292458 TCTTAGTGCA
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
63 1 0.01
64 77 0.91
65 3 0.04
66 4 0.05
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (62 bp):
AACATCGAATGCATTTGATGCATCGATGCACAACCATGCACCGATGCACTCAGGCATTTTAA
Found at i:294303 original size:27 final size:27
Alignment explanation
Indices: 294244--294303 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
294234 TATAATATAG
* * **
294244 TCATTTTACACTTCAAGGGTATTTTTG
1 TCATTTTACACTTCAAGGGCAATTTCA
*
294271 TCATTTTACACTTCAGGGGCAATTTCA
1 TCATTTTACACTTCAAGGGCAATTTCA
*
294298 TGATTT
1 TCATTT
294304 CATAATCAGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.45
Consensus pattern (27 bp):
TCATTTTACACTTCAAGGGCAATTTCA
Found at i:294901 original size:19 final size:19
Alignment explanation
Indices: 294869--294931 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
294859 CGGTTATACC
294869 GGTCAAAGGTCAACGAGTTG
1 GGTCAAA-GTCAACGAGTTG
**
294889 GGTCAAAGTCAACGAGTCA
1 GGTCAAAGTCAACGAGTTG
* * *
294908 AGTCAAAGTCAATGGGTTG
1 GGTCAAAGTCAACGAGTTG
294927 GGTCA
1 GGTCA
294932 GGTTGACTCG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 28 0.80
20 7 0.20
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.21
Consensus pattern (19 bp):
GGTCAAAGTCAACGAGTTG
Found at i:296122 original size:17 final size:19
Alignment explanation
Indices: 296093--296133 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
296083 GTTTAAAGAA
296093 TTAAAATTAAAAA-AATAT
1 TTAAAATTAAAAATAATAT
*
296111 TTAAAA-TAAAAATAATCT
1 TTAAAATTAAAAATAATAT
296129 TTAAA
1 TTAAA
296134 TTATAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
TTAAAATTAAAAATAATAT
Found at i:311196 original size:2 final size:2
Alignment explanation
Indices: 311191--311219 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
311181 TTGGGAGGAA
311191 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
311220 GGTATAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:314884 original size:13 final size:13
Alignment explanation
Indices: 314868--314892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
314858 CTGAAAACAA
314868 AAATAAAAAATAG
1 AAATAAAAAATAG
314881 AAATAAAAAATA
1 AAATAAAAAATA
314893 TTTTCTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAATAAAAAATAG
Found at i:317109 original size:3 final size:3
Alignment explanation
Indices: 317101--317142 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
317091 ATACTTTTAG
317101 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
317143 GTGATTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:323070 original size:21 final size:20
Alignment explanation
Indices: 323041--323119 Score: 60
Period size: 21 Copynumber: 4.0 Consensus size: 20
323031 ATCTGCAAAA
*
323041 AAATTAATTAAGTAAAATATT
1 AAATAAATTAA-TAAAATATT
*
323062 AAATAAATT-A-AATA-ATT
1 AAATAAATTAATAAAATATT
323079 AAATAAATTAAATACAAAATATT
1 AAATAAATT-AAT--AAAATATT
323102 -AA-AAATATAATAAAATAT
1 AAATAAAT-TAATAAAATAT
323120 ACCTTAGACA
Statistics
Matches: 48, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
17 12 0.25
18 3 0.06
19 8 0.17
20 1 0.02
21 15 0.31
22 6 0.12
23 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (20 bp):
AAATAAATTAATAAAATATT
Found at i:323073 original size:9 final size:9
Alignment explanation
Indices: 323059--323092 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
323049 TAAGTAAAAT
323059 ATTAAATAA
1 ATTAAATAA
323068 ATTAAAT-A
1 ATTAAATAA
323076 ATTAAATAA
1 ATTAAATAA
323085 ATTAAATA
1 ATTAAATA
323093 CAAAATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTAAATAA
Found at i:323091 original size:17 final size:17
Alignment explanation
Indices: 323055--323092 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
323045 TAATTAAGTA
323055 AAAT-ATTAAATAAATT
1 AAATAATTAAATAAATT
323071 AAATAATTAAATAAATT
1 AAATAATTAAATAAATT
323088 AAATA
1 AAATA
323093 CAAAATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATAATTAAATAAATT
Found at i:323179 original size:19 final size:20
Alignment explanation
Indices: 323155--323196 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
323145 TTTGAAAGAT
*
323155 TATAATAAAATATTA-AAAA
1 TATAATAAAATATAATAAAA
323174 TATAATAAAATATAATAAAA
1 TATAATAAAATATAATAAAA
323194 TAT
1 TAT
323197 TAAAATGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TATAATAAAATATAATAAAA
Found at i:323185 original size:10 final size:10
Alignment explanation
Indices: 323155--323196 Score: 68
Period size: 10 Copynumber: 4.3 Consensus size: 10
323145 TTTGAAAGAT
323155 TATAATAAAA
1 TATAATAAAA
*
323165 TATTA-AAAA
1 TATAATAAAA
323174 TATAATAAAA
1 TATAATAAAA
323184 TATAATAAAA
1 TATAATAAAA
323194 TAT
1 TAT
323197 TAAAATGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 8 0.28
10 21 0.72
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
TATAATAAAA
Found at i:332761 original size:24 final size:24
Alignment explanation
Indices: 332734--332805 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
332724 GATACTTGAC
332734 CTGGATTCTGTTCTGATTTCTGAT
1 CTGGATTCTGTTCTGATTTCTGAT
* **
332758 CTGGATTATGTTCTGATAACTGAT
1 CTGGATTCTGTTCTGATTTCTGAT
* * *
332782 ATGAATTCTGTACTGATTTCTGAT
1 CTGGATTCTGTTCTGATTTCTGAT
332806 ATATCCGTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.14, G:0.19, T:0.46
Consensus pattern (24 bp):
CTGGATTCTGTTCTGATTTCTGAT
Found at i:334095 original size:23 final size:23
Alignment explanation
Indices: 334068--334135 Score: 109
Period size: 23 Copynumber: 2.9 Consensus size: 23
334058 TCAACTCACT
334068 GGGTCAACTCGTTGACTTTGATC
1 GGGTCAACTCGTTGACTTTGATC
*
334091 GGGTCAACTCGTTAACTTTGATC
1 GGGTCAACTCGTTGACTTTGATC
*
334114 GAGTCAACTCGTTGACTGTTGA
1 GGGTCAACTCGTTGACT-TTGA
334136 CTTTGACTGA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
23 37 0.90
24 4 0.10
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (23 bp):
GGGTCAACTCGTTGACTTTGATC
Found at i:336192 original size:24 final size:24
Alignment explanation
Indices: 336137--336192 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
336127 TTTTATTTGA
336137 ATTCTGTTCTGATACCTAACCTAG
1 ATTCTGTTCTGATACCTAACCTAG
* ** * *
336161 ATTATGTTCTGATTTCTAATCTGG
1 ATTCTGTTCTGATACCTAACCTAG
336185 ATTCTGTT
1 ATTCTGTT
336193 ATAATAACTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.46
Consensus pattern (24 bp):
ATTCTGTTCTGATACCTAACCTAG
Found at i:336427 original size:4 final size:4
Alignment explanation
Indices: 336418--336491 Score: 94
Period size: 4 Copynumber: 18.5 Consensus size: 4
336408 TATGTTTTAA
* * *
336418 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT GTAT ATGT ATGT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* * *
336466 ATAT ATGT ATAT ATGT ATGT ATAT AT
1 ATAT ATAT ATAT ATAT ATAT ATAT AT
336492 CTTTTCACTG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 62 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (4 bp):
ATAT
Found at i:337104 original size:13 final size:13
Alignment explanation
Indices: 337086--337114 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
337076 CACATTTAGA
337086 TTTTAAAAAATAT
1 TTTTAAAAAATAT
337099 TTTTAAAAAATAT
1 TTTTAAAAAATAT
337112 TTT
1 TTT
337115 ATTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTTAAAAAATAT
Found at i:341738 original size:38 final size:37
Alignment explanation
Indices: 341688--341761 Score: 130
Period size: 38 Copynumber: 2.0 Consensus size: 37
341678 ATCATTGTTT
*
341688 AAAAGTTTATTTTCTGCGCCTATATAGGAAGAGTGTG
1 AAAAGTTTATTTTATGCGCCTATATAGGAAGAGTGTG
341725 AAAAGTTTTATTTTATGCGCCTATATAGGAAGAGTGT
1 AAAAG-TTTATTTTATGCGCCTATATAGGAAGAGTGT
341762 AAATTAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 5 0.14
38 30 0.86
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.36
Consensus pattern (37 bp):
AAAAGTTTATTTTATGCGCCTATATAGGAAGAGTGTG
Found at i:342078 original size:19 final size:19
Alignment explanation
Indices: 342041--342078 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
342031 AAATAAAATA
*
342041 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
342060 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
342079 ATGAATCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:342182 original size:87 final size:87
Alignment explanation
Indices: 342035--342876 Score: 1245
Period size: 87 Copynumber: 9.7 Consensus size: 87
342025 AACTTTAAAT
*
342035 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATA-TGAATCCA-ACAATTTTGC
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA-ACTGAATCCAGTC-ATTTTGC
342098 TTAGGCATGCCAATTATTCTAACA
64 TTAGGCATGCCAATTATTCTAACA
* * * *
342122 AAAATAATTACAGAATTACACCTATCTTAAATAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
342187 AGGCATGCCAATT-TTCTAACA
66 AGGCATGCCAATTATTCTAACA
* * * * *
342208 AAAATACTTAAAGAGTTGCACCTAACTTAATGAGTTAAAGCTATA-TGAATCCAATCATATTGCT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA-ACTGAATCCAGTCATTTTGCT
* *
342272 TAGGCATTCTAATTATTCTAACAA
65 TAGGCATGCCAATTATTCTAAC-A
* * * *
342296 AAAATACTTAAAGTGTTACACCTATCATAAAGAGTTAAAGCTATCTGAATCCAGTAATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
*
342361 AGGCATGCAAATTATTCTAACA
66 AGGCATGCCAATTATTCTAACA
* * * *
342383 AAAATACTTAAAGACTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATAATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
342448 AGGCATGCCAA-TATTCTAACA
66 AGGCATGCCAATTATTCTAACA
*
342469 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
342534 AGGCATGCCAATTATTCTAACAAA
66 AGGCATGCCAATTATTCTAAC--A
* * * *
342558 AAAATACTTAAAGAGTTACTCCTATCTTAAAGCGTTAAAGCTATCTAAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
*
342623 AGGCATGACAATTATTCTAACA
66 AGGCATGCCAATTATTCTAACA
342645 AAAA-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATA-TGAATCCAGTCATTTTGCT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA-ACTGAATCCAGTCATTTTGCT
* *
342708 TAGGCAAGCAAATTATTCTAACA
65 TAGGCATGCCAATTATTCTAACA
* *
342731 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTAATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
342796 AGGCATGCCAATTATTCTAAC-
66 AGGCATGCCAATTATTCTAACA
* *
342817 AAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCT-A-TGAATCCAATCATTTT
1 AAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTT
342877 TAACAAAAAA
Statistics
Matches: 688, Mismatches: 54, Indels: 28
0.89 0.07 0.04
Matches are distributed among these distances:
85 14 0.02
86 240 0.35
87 275 0.40
88 76 0.11
89 83 0.12
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (87 bp):
AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
AGGCATGCCAATTATTCTAACA
Found at i:342426 original size:19 final size:19
Alignment explanation
Indices: 342389--342428 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
342379 AACAAAAATA
*
342389 CTTAAAGACTTACACCTAT
1 CTTAAAGACTTAAACCTAT
* *
342408 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGACTTAAACCTAT
342427 CT
1 CT
342429 GAATCCAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (19 bp):
CTTAAAGACTTAAACCTAT
Found at i:342465 original size:174 final size:175
Alignment explanation
Indices: 342035--342876 Score: 1290
Period size: 173 Copynumber: 4.9 Consensus size: 175
342025 AACTTTAAAT
* *
342035 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCA-ACAATTTTGCT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTC-ATTTTGCT
* * * *
342099 TAGGCATGCCAATTATTCTAAC-AAAAATAATTACAGAATTACACCTATCTTAAATAGTTAAAGC
65 TAGGCATGCCAATTATTCTAACAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGC
* *
342163 TAACTGAATCCAGTCATTTTGCTTAGGCATGCCAATT-TTCTAACA
130 TATCTGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAACA
* * * * * *
342208 AAAATACTTAAAGAGTTGCACCTAACTTAATGAGTTAAAGCTATATGAATCCAATCATATTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * * *
342273 AGGCATTCTAATTATTCTAACAAAAAATACTTAAAGTGTTACACCTATCATAAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
*
342338 ATCTGAATCCAGTAATTTTGCTTAGGCATGCAAATTATTCTAACA
131 ATCTGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAACA
* * *
342383 AAAATACTTAAAGACTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATAATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
342448 AGGCATGCCAA-TATTCTAAC-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
*
342511 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
131 ATCTGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAAC--A
* * *
342558 AAAATACTTAAAGAGTTACTCCTATCTTAAAGCGTTAAAGCTATCTAAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
342623 AGGCATGACAATTATTCTAAC-AAAAA-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* *
342686 ATATGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACA
131 ATCTGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAACA
*
342731 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTAATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
342796 AGGCATGCCAATTATTCTAACAAAATA-ACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
*
342860 A--TGAATCCAATCATTTT
131 ATCTGAATCCAGTCATTTT
342877 TAACAAAAAA
Statistics
Matches: 615, Mismatches: 47, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
172 15 0.02
173 242 0.39
174 121 0.20
175 223 0.36
176 14 0.02
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (175 bp):
AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
AGGCATGCCAATTATTCTAACAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
ATCTGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAACA
Found at i:342506 original size:261 final size:261
Alignment explanation
Indices: 342035--357049 Score: 19225
Period size: 261 Copynumber: 59.5 Consensus size: 261
342025 AACTTTAAAT
* *
342035 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCA-ACAATTTTGCT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTC-ATTTTGCT
* * * *
342099 TAGGCATGCCAATTATTCTAACAAAAATAATTACAGAATTACACCTATCTTAAATAGTTAAAGCT
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* *
342164 AACTGAATCCAGTCATTTTGCTTAGGCATGCCAATT-TTCTAACAAAAATACTTAAAGAGTTGCA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* * * * * * *
342228 CCTAACTTAATGAGTTAAAGCTATATGAATCCAATCATATTGCTTAGGCATTCTAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
342293 CAA
260 C-A
* * *
342296 AAAATACTTAAAGTGTTACACCTATCATAAAGAGTTAAAGCTATCTGAATCCAGTAATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
342361 AGGCATGCAAATTATTCTAACAAAAATACTTAAAGACTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* *
342426 TCTGAATCCAATAATTTTGCTTAGGCATGCCAA-TATTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
342490 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
342555 AAA
261 --A
* * *
342558 AAAATACTTAAAGAGTTACTCCTATCTTAAAGCGTTAAAGCTATCTAAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
342623 AGGCATGACAATTATTCTAACAAAAA-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * *
342687 TATGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
*
342752 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTAATTTTGCTTAGGCATGCCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
342817 -
261 A
* *
342817 AAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTA--TGAATCCAATCA--TT--T
1 AAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT
** * *
342876 T-----T----A--A--C-AA-AAAAA-ACTTAAATTGTTTTCACCTATCTTAAAAAGTTAAAGC
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAG-TTACACCTATCTTAAAGAGTTAAAGC
* * * *
342925 TATATGAATACAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAAATACTTAAAGAGTTAC
129 TATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTAC
342990 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
343055 AC-
259 ACA
*
343057 AAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA--TT--T
1 AAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT
* *
343118 T-----T----A--A--C-AA-AAAAA-ACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCT
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* * *
343167 ATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTATA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* *
343232 CCTACCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGACAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT-A
*
343297 AAA
259 ACA
*
343300 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATATTTGCT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCAT-TTTGCT
* * * *
343365 TAGGCATGCCAATTATACTAACAAAAATACTTAAAGAGTTACTCATTTCTTAAAGAGTTAAAGCT
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* ** * *
343430 ATCTGAATCCAGTCATTTTGATTAGGCATATCAATTATTCTAACAAAAAAACTTAAGGAGTTACA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* * * * *
343495 CCTATCTTTAAGAGTTAAAGCTATATGAATCCAGCCATTTTGCTTAGGCATGCCAGTTTTTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
343560 CA
260 CA
* *
343562 AAATTACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCT
343626 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
*
343691 ATCTGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* * * **
343756 CATATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTCCTTAGGCAAACCAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
343821 CA
260 CA
*
343823 AAAATAC-TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
343887 AAGCATGCCAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* **
343952 TTTGAATCCAAACATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * * * **
344017 CTATCTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATTCCCTTTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
344082 A
261 A
*
344083 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * *
344148 AGGCATGCCAATTATTCTAACAAAACA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
** * * *
344212 ATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTAC
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTAC
* *
344276 AACTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
*
344341 AAA
259 ACA
* * *
344344 AAAATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
344409 AGGCAAGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* ** * *
344474 TCTAAATCCAACCATTTTGCTTAGGCATGCCAACTATTCTAACAAAAAAACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * *
344539 CTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
344604 A
261 A
* *
344605 AAAATACTTAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATCTGAATCTAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
344670 AGGCATGCCAATTATTCTAAC-AAAATAACTTAAACG-GTTACACCTATCTTAAAGAGTTAAAGC
66 AGGCATGCCAATTATTCTAACAAAAAT-ACTTAAA-GAGTTACACCTATCTTAAAGAGTTAAAGC
* *
344733 TATCTG-A---A-TC------C--A---AT--C-ATT-TT-TAACAAAAAAACTTAAATAGTTAC
129 TATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTAC
* * * * *
344777 ACTTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
344842 ACA
259 ACA
344845 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
344910 AGGCATCCCAATTATTCTAAC-AAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
**
344974 ATCTGAATCCAACCATTTTGCTTAGGCATGCCAATTATTCT-------A-AC---AA-A---A-A
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
** *
345023 --TA-CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
345085 CA
260 CA
* * *
345087 AAAATACTTAAAGAGTTACACCTATCTTAAATAGTGAAAGCTAACTGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * *
345152 AGGCATGCTAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAATGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* *
345217 TATGAATCCAATCATTTTGCATT-GGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
131 TCTGAATCCAGTCATTTTGC-TTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* *
345281 CCTACCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
*
345346 AA
260 CA
* *
345348 AAAATACTTAAAGAGTTACACATATCTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCT
345412 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
*
345477 ATCTGAATCCAGTCATTTTGCTTAGGCATGCTAATTATTCTAACAAAAATACTTAAAGAGTTACA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* * *
345542 CCTATGTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTTAGGCAAGCCAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
345607 CA
260 CA
* * *
345609 AAAATAC-TAAAGAGATACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAATCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * *
345673 AAGCATGCCAATTTTTCTAACAAAAATACTTAAAGAGTTAAACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* *
345738 TTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACTC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * ** *
345803 CTATCTTTAAGAGTTAAAGCTATATGAATCCAACCATTTTGCTTAGGCATGCCCATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
*
345868 G
261 A
* * *
345869 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGATTCCAGTAATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * * *
345934 AGGCTTGCCAATTATTCTAACAAAAA-ACCCTAAAGAGTTACACCTATATTTAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAAATA-CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
** * * * * *
345998 ATCTGAATAGAGTAAATTTGCTAAGGCATG-CATATTTTTCTAACAAAATTACTTAAAGAGTTAC
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTAC
* * * * * *
346062 AACTATCTTAAAGAGTTAAAGCAATATGAATCCAGCCATTTTTCTTAGGCATGCAAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT-
*
346127 AAAA
258 AACA
* * * * * *
346131 AAAAAACTTAAAGAGTTACATCTATCTAAAAGAGTTAAACCTATCTGAATCTAGTCATTTTTCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
346196 AGGCAAGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * * *
346261 TCTAAATCCA-CCATTTTGCATAGGCATGCCAATTATTCTAACAAAAAAACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * * * * *
346325 CTATCTTAAAGATTTAAAGCTATATGAATCCAGCCATTTTGCTTAGGCAAGCAAATTTTTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
346390 A
261 A
*
346391 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
346456 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTTAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * * * ** *
346521 TATGAAACCAATCATTTTGCTTAGGCATTCCCTTTATTCTAACAAAAATACTTAAAGTGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* *
346586 CTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATACCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
346651 A
261 A
* * * ** * *
346652 AAACA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCT
1 AAA-ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT
* * * *
346716 TAGGCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTACAACTACCTTAAATAGTTAAAGC
65 TAGGCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGC
* *
346780 TATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAAATACTTAAAGAGTTAC
129 TATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTAC
* * * *
346845 ACATATCTTAAAGTGTTAAAGCTATCT-AATTCTAGTCATTTTGCTTAGGCTTGCCAATTATTCT
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAGGCATGCCAATTATTCT
346909 AACA
258 AACA
*
346913 AAAATACTTAAAGAGTTAAACCTATCTTAAAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * *
346977 AGGCATGCCAATTATTCTAACAAAAATAGTTAAAGAGTTACTCCTATCTTTAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * * *
347042 TATGAATCCAATCATTTTGCTTAGGCATTCCCATTATTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * * *
347107 CTATCTTAAAGAGTTAAAGCTATATGATTCCAGTAATTTTGCTTAGGCTTGCCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
347172 A
261 A
* * * ** * *
347173 AAAA-ACCCTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCT
1 AAAATA-CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT
*
347237 AAGGCATG-CATATT-TTCTAAC-AAAATACTTAAAGAGTTACA-CTATC-TAAAGAGTTAAAGC
65 TAGGCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGC
* * * * * *
347297 AATATGAATCCAGCCATTTTTCTTAGGCATGCAAATTATTCTAA-AAAAAAACTTAAAGAGTTAC
129 TATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTAC
* * * * * *
347361 ATCTATCTAAAAGAGTTAAACCTATCTGAATCTAGTCATTTTTCTTAGGCAAGCCAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
347426 ACA
259 ACA
* * * ** *
347429 GAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTAAATTCAACCATTTTGCAT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
347494 AGGCATGCCAATTATTCTAACAAAAAAACTTAAAGAGTTACACCTATCTTAAAGATTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * * *
347559 TATGAATCCAGCCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
*
347624 CTATC-TAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
347688 -
261 A
347688 AAAATAACTTAAACG-GTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA------
1 AAAAT-ACTTAAA-GAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGC
* *
347746 TT-----T-----TTA--C--A-AAAAA-ACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGC
64 TTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGC
* * * * *
347795 TATATGAATCCAATCATTTTGCTTAGGAAAGCAAATTATTCTAACAAAAATACTTAAAGAGTTAC
129 TATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTAC
*
347860 ACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
347925 AC-
259 ACA
* * ** *
347927 AAAATAACTTAAACAGTTACAACTATCTTAAAGAGTTAAAGCTATCTGAATCCAACCATATTGCT
1 AAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT
*
347992 TAGGCTTGCCAATTATTCTAACAAAAATACTT-AA-AG--------A---T------TTAAAGCT
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* *
348038 ATCTGAATCCA-TCCATTTTGCTTAGGTATGCAAATTATTCTAACAAAAATACTTAAAGAGTTAC
130 ATCTGAATCCAGT-CATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTAC
* * * * * * *
348102 ACCTATCTTATATAGTGAAAACTAACTGAATCAAGTCATTTTGCTTAGGCATGCCAATTTTTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
348167 ACA
259 ACA
* * * * * *
348170 AAAATGCTTAAAGAGTTATACCTATCTTAATGAGATAAAGCTATATGAATCCAATCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * * * * *
348235 AGGAATGCTAATTATTCTAACAAAAATACTTATAGAGTTACACCTACCTTAAAGAATTAAAACTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* *
348300 TCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * *
348365 CTATCTTAAAGAGTTAAAGTTATCTGAATCCAATCATATTTGCTTAGGCATGCCAATTATACTAA
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCAT-TTTGCTTAGGCATGCCAATTATTCTAA
348430 CA
260 CA
* * * *
348432 AAAATACTTAAAGAGTTACTCATTTCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGATT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
** *
348497 AGGCATATC-ATTATTCTAACAAAAA-ACTTAAAGAGTTACACCTATCTTTAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * *
348560 TATGAATCCAGTCATTTTGCTTAGGCATGCCAGTTTTTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* *
348625 CTATCTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCTTAGTCATGCCAATTATTCTAA
196 CTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
348689 CA
260 CA
* * *
348691 AAAATACTTAAAGAGTTACACCCATCTTAAAGAGATAAAGCTATCTGAATCCAGTCATTTTCCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
348756 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCCATCTTAAAGAGTTAAA-CTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
*
348820 TCTTAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * * *
348885 CGATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTTTGGCAAGCCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
348950 A
261 A
* *
348951 AAAATAC-TGAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCA-TCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
349014 AAGCATG-CAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
*
349078 TTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * * * *
349143 CTATCTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATTCCCATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
349208 A
261 A
* * *
349209 AAAATACTTAAAGAGTTAAACCTATCTTAAAGAGTTAAAACTATATGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * *
349274 AGGCATGCCAATTATTCTAACAAAACA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
** * * *
349338 ATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTAC
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTAC
* * * * *
349402 AACTATCTTAAAGAGTTAAAGCTATCCGAATCCAATCATTTTGCTTAGGCATGCAAATTTTTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
349467 A-A
259 ACA
* * *
349469 AAAATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * * * *
349534 AGGCAAGCCAATTATTCTAACAAAATTACTTAAAGAGTTACACTTGTCTTAAGGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * ** * *
349599 TCTAAATTCAACCATTTTGCTTAGGCATGCCAACTATTCTAACAAAAAAACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * *
349664 CTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
349729 A
261 A
* * * *
349730 AAAATACATAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATATGAATCTAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
349795 AGGCATGCCAATTATTCTAAC-AAAATAACTTAAACG-GTTACACCTATCTTAAAGAGTTAAAGC
66 AGGCATGCCAATTATTCTAACAAAAAT-ACTTAAA-GAGTTACACCTATCTTAAAGAGTTAAAGC
*
349858 TATCTGAATCCAGTCA--TT--TT-----T----A--A--C--A-AAAAA-ACTTAAATAGTTAC
129 TATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTAC
* * * *
349902 ACCTATATTAAAAAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCAAT-CAAATTATTCT
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGC-ATGCCAATTATTCT
349966 AACA
258 AACA
349970 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA-TTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
350034 AGGCATGCCAATTATTCTAAC-AAAATAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
** *
350098 ATCTGAATCCAACCATTTTGCTTAGGCATGCCTATTATTCT-------A-AC---AA-A---A-A
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
** *
350147 --TA-CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
350209 CA
260 CA
* * * *
350211 AAAATACTTAAAGTGTTACACCTATCTTAAAAAGTGAAAGCTAACTGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * *
350276 AGGCATGCTAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAATGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * * *
350341 TATGAA-CACAATGATTTTGCATT-GGCATGGCAATTATTCTAACAAAAATACTTAAAGAGTTAC
131 TCTGAATC-CAGTCATTTTGC-TTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTAC
* *
350404 ACCTACCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
*
350469 AAA
259 ACA
*
350472 AAAATACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTT-CT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCT
* * *
350535 TAGGCATGCCAATTATTCTAAAAAAAATATTTAAAGAGTTACACCTAACTTAAAGAGTTAAAGCT
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
**
350600 ATCTGAATCCAGTCATTTTGCTTACCCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* * *
350665 CCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTCCTTAGGCAAGCCAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
350730 CA
260 CA
* * *
350732 AAAATAC-TAAAGAGTTACATCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGCCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
350796 AAGCATG-CAAGTT-TTCTAACAAAAATACTTAAAGAGTTACACCTATCTTTAAGAGTTAAAGCT
66 AGGCATGCCAA-TTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* * * * *
350859 TTTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAATAAAAAAACTTAAATAGTTACA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* * * * **
350924 CCTATCTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATTCCCTTTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
350989 CA
260 CA
* * *
350991 AAAATACTTGAAGTGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * * * *
351056 AGGCATACCAATTATTCTAACAAAACA-CCTTAAAAAGTTACACCTATATTTAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* ** * * *
351120 ATCTGAGTAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTAC
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTAC
* * *
351184 AACTATCTTAAAGAGTTAATGCTATCTGAATCCAGTCATTTTGCTTAGGCATG-TAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT-
*
351248 AAAAAA
258 --AACA
* * *
351254 AAAATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
351319 AGGCAAGCCAATTATTCTAACAAAAATAC-TGAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * *
351383 ACTGAATCCAGTCATTTTGCTTAAGCATG-CAATTTTTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* *
351447 CTATCTTAAAGAGTTAAAACTATTTGAATCCAGTCA-TTTGCTTAGGCATGCCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
351511 A
261 A
* * *
351512 AAAATAC-TAAAGAGTTACACCTATCTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * *
351576 AAGCATTCCCATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * *
351641 TATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAACA-CCTTAAAGAGTTACA
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTTACA
* * ** * * *
351705 CCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTA
351769 ACA
259 ACA
* *
351772 AAAATACTTAAAGAGTTACAACTATCTTAAAGAGTTAAAGCTATCTGTATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * * *
351837 AGGCATGCAAATTATTCTAAAAAAAAATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCT-AACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* * * * *
351902 ATTTGAGTCTAGTCATTTTGCTTAGGCAAGCCAATTATTCTAACAAAATTACTTAAAGAGTTACA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
* * **
351967 CTTATCTTAAAGAGTTAAAGCTATCTAAATCCAACCATTTTGCTTAGGCATGCCAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
352032 CA
260 CA
* *
352034 AAAAAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * * *
352099 AGGCAAGCAAATTATTCTAACAAAAATACATAAAGAGTTACACCTATCTTAAAGAATTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* *
352164 TATGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAATAACTTAAACG-GTTAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAT-ACTTAAA-GAGTTAC
* *
352227 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGT-A-ATT--TTA---A---CAA--A---AA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
*
352277 ACT
259 ACA
* * * ** * * *
352280 TAAATAGTT--ACACCT--A--TCT-TAAAA-AGTTAAAGCTATATGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
** *
352337 AGGCAAT-AAAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAACAGTTAAAGCT
66 AGGC-ATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
352401 ATCTGAATCCAGTCAATTTT-CTTAGGCATGCCAATTATTCTAAC-AAAATAACTTAAAGAGTTA
130 ATCTGAATCCAGTC-ATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAT-ACTTAAAGAGTTA
* **
352464 CACCTATCTTAAAGAGTTAAAGCTATCTGGATCCAACCA-TTTGCTTAGGCATG-C---TATTCT
193 CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT
352524 ----
258 AACA
**
352524 ---A-AC---AA-A---A-A--TA-CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * *
352574 AGGCATGCAAATTATTCTAACAAAAATACTTAAAG-GTTACACCTATCTTAAAAAG-TGAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * * *
352637 ACTGAAT-C--TCA-TTTGCTTAAGCATGCTAATTTTTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* * * * *
352698 CTATCTTAATGAGTTAAAGCTATATGAATACAATGATTTTGCATT-GGCATGCCAATTATTCTAA
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGC-TTAGGCATGCCAATTATTCTAA
352762 CA
260 CA
* *
352764 AAAATACTTAAAGAGTTACACCTACCTTAAAGAGTTAAAGCTATCTGAATCCAATCA-TTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
352828 AGGCATG-CAATTATTCT---AAAAATACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
*
352889 TCT-AATTCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA-AAAAATATTTAAAGAGTTACA
131 TCTGAA-TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
*
352952 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGCCATGCCAATTATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
353017 CA
260 CA
* *
353019 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTCCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* **
353084 AGGCAAGCCAATTATTCTAACAAAAATAC-TAAAGAGTTACATTTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* * *
353148 ACTGAATCCAGTCATTTTGCTTAAGCATG-CAATTTTTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* *
353212 CTATCTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAT
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
353277 A
261 A
* *
353278 AAAAAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* * * *
353343 AGGCATACCAATTATTCTAACAAAACA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCT
66 AGGCATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
** * * * *
353407 ATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTAG
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTAC
* * * *
353471 AACTATCTTAAAGAGTTAATGCTATCTGAATCCAGTCATTTTGCATAGGCATGCAAATTATTCTA
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
*
353536 AAA
259 ACA
* * *
353539 AAAATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
353604 AGGCAAGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAATCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* *
353669 TATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAACA-CCTTAAAGAGTTACA
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTTACA
* * ** * * *
353733 CCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATGCTTAATT-TTCT-
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGC-CAATTATTCTA
353796 ---
259 ACA
353796 ---A-AC---AA-A---A-A--TA-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTC
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-
* * * *
353846 T-GGCATGCAAATTATTCTAAAAAAAATACTTATAGAGTTACATCTAT-TTAAAGAGTTAAAGCT
65 TAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
* * *
353909 ATCTGAATCTAGTCATTTTGCTTAGGCAAGCCAA-GATTCT-A-AAAAATACTT-AAGAGTTACA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
353970 CCTATCTTAAAGAGTTAAAGCTATCT-AATCCAGTCA-TTTGCTTAGGCATGCCAA-TATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
354032 CA
260 CA
* * *
354034 AAAAAACTTAAAGAATTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT-TTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
354098 A-GCAAGCCAATTATTCTAAC--AAATACTT-AA-AGTTACACCTATCTTAAAGAATTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* *
354158 TCTGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAATAACTTAAACG-GTTAA
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAAT-ACTTAAA-GAGTTAC
*
354221 ACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCA--TT--TT-----T----A--A--C-A
194 ACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTA
354268 A-A
259 ACA
* * *
354270 AAAA-ACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
354334 AGGCAAGCAAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
354399 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAATATAC-T-AA-AGTTACA
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTTACA
**
354461 CCTATCTT-AAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATG-C-ATT-TTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
354522 CA
260 CA
* * * ** * * **
354524 AAAATACTT-AAGAGTTA-AACTAT-TGAATCAGA-TT--TGCT-TAGGCATGCCA-TTATTTAA
1 AAAATACTTAAAGAGTTACACCTATCTTAA--AGAGTTAAAGCTATCTGAAT-CCAGTCATTTTG
*** * * ** * *** * * * **
354581 C--AAAAATACTTAAAGAGT-T-ACACCTAT-CTT-AA-AGTTAAAGCTA--TGAATCCAGTCAT
63 CTTAGGCATGC-CAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--T
*** ** * * * ** * * *
354637 TTTGCT-TAGGCATGCCA---ATTTTTC-TA---A---CAA--A--AT-ACTTAAAGAGTT--AC
124 AAAGCTATCTGAAT-CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAG
** * ** * *
354684 ACCT--ATCT-T-AAA--GAGTTAAAGCTAATATG-ATCCAAT--TTTTGCTT-GGCATGCCAAT
188 AGTTACACCTATCTTAAAGAGTTAAAGCT-ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAAT
354739 TATTCT-A-A
252 TATTCTAACA
*
354747 AAAATACTTAAAG-GTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
354811 AGGCATGCCAATTATTCTAAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
354876 TCTGAATCCAGTCATTTTGCTTAGGCAT-CCAA-T-TTCTAAC--AAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
354936 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTA-GCATGCCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
355000 A
261 A
*
355001 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
355066 AGGCAAGCCAA-TATTCTAACAAAAATAC-T--AGAGTTACACCTATCTT-AA-AGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
355125 TCTGAATCCA---ATTTTGCTTA-GCATG-CAATT-TTCTAACAAAAATACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
*
355184 CTATCTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTA-T-TAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
355247 -
261 A
*
355247 AAAATACTTAAAGA-TTACACCTATCTT-AAGAGTT-AAGCTATATG-ATCCA-T-ATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
355306 AGGCATGCCCA--ATTCTAAC-AAAATACTTAAAGAGTTACACCTATCTT-AA-AGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
*
355366 TATGAATCCAGTCA--TT--TT--GCAT-CC-ATTATTCTAAC-AAAATAC-T--A-AGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
*
355418 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAC
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
355483 -
261 A
*
355483 AAAATA-ATAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA--TGAATCCAGTCA-TTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
355544 AGGCATG-CAATTTTTCTAACAAAAATACTTAAAGAGTTAC-CCTATCTTAAAGA-TTAAA-CTC
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
355605 T-TGAAT--A-TCCATTTTTGCTTAGGCATGCCAATTATTCTAACAAAAAATACTT-AAGAGTT-
131 TCTGAATCCAGT-CA-TTTTGCTTAGGCATGCCAATTATTCTAAC-AAAAATACTTAAAGAGTTA
355664 -ACCTATCTT-AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCC---T-TT-T
193 CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT
355722 AACA
258 AACA
*
355726 AAAATAC-TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAT-AGAATCCAGTCA-TTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
355788 AGGCATG-CAATTATTCTAAC--AAA-AC-TAAAGAGTTACACCTATCTT-AAG-GTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
* *
355846 TCTGAAT-C-GTCATTTTGCTTAGGCAT--AAATTTTTCTAACAAAAATACTT-AAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
* *
355906 CTATCTTAAA-AGTTAAAGCTATATGAATCCAGTCA-TTTGCTTAGGCATGCAAATTATTCTAA-
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
355968 A
261 A
355969 AAAATACTT--A-AGTTACA-C--TCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA-TTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
356027 AGGCATG-CAATTATTCTAAC--AAATACTT-AA-AGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
356087 TCT-AATCCA--CATTTTGCTTAGGCATGCC-A--ATTCTAAC-AAAA-ACTTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
** * *
356144 ACTATCTTAAAGAGTTAAAGCTAAATGAATCCAATCATTTTGCTTAGGCAAG-CAATTATTCTAA
196 -CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
356208 CA
260 CA
356210 AAAATACTT-AAGAGTTACACCTATCTTAAAGAGTTAAAGCTA--TGAATCCAGTCATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
356272 AGGCATGCCAATTATTCTAAC--AAA-ACTTAAAGAGTTACACCTATCTT-AAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
*
356333 TCTGAAT-AAGTCA-TTTGCTTAGGCATG-CAATT-TTCTAAC-AAAATAC-TAAAGAGTTACA-
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
356391 CTATC-TAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAAATTATTCT-A
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCC-AATTATTCTAA
356454 CA
260 CA
356456 AAAA-AC-T--A-A-TTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGC-T
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
*
356513 AGGCAAGCC-ATT-TTCTAAC-AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
356575 --TGAATCCAG---TTTTGCTTAGG-ATGCCAATTATTCTAAC--AAA-A-TTAAAGAGTTACAC
131 TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
*
356630 CTAT-TT-AAGAGTTAAAGCTATCTGAAT--AATCATTTTGGCTTAGGCATG-C---TATTCTAA
196 CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT-GCTTAGGCATGCCAATTATTCTAA
356687 CA
260 CA
356689 AAAATACTTAAAGAGTTACA-CTATCTTAAAGAGTTAAAGCTATCTGAATCCA--CATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
356751 AGGCATGCCAATTATTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
66 AGGCATGCCAATTA-TTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCT
*
356816 ATCTG-ATCCAGTCA-TTTGCTTAGGCAAGCCAATTATTCTAAC-AAAATACTTAAAGAGTTACA
130 ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACA
*
356878 CCTATCTT-AAGAGTTAAAGCTATCTGAATCTA-TCA-TTTGCTTAGGCATG-CAA--ATTCTAA
195 CCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA
356937 C-
260 CA
356938 AAAA-ACTT-AA-AG-TACACCTATCTTAAAGAGTTAAAGCTA--TGAATCC---CATTTTGCTT
1 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
356994 AGGCAAG-CAATTATTCTAACAAAAAAACTTAAAGAGTTACACCTATC-TAAAGAGTT
66 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTT
Statistics
Matches: 13059, Mismatches: 1132, Indels: 1147
0.85 0.07 0.07
Matches are distributed among these distances:
222 6 0.00
223 26 0.00
224 14 0.00
225 24 0.00
226 10 0.00
227 11 0.00
228 7 0.00
229 8 0.00
230 14 0.00
231 72 0.01
232 33 0.00
233 25 0.00
234 75 0.01
235 102 0.01
236 87 0.01
237 156 0.01
238 457 0.03
239 458 0.04
240 773 0.06
241 594 0.05
242 809 0.06
243 138 0.01
244 107 0.01
245 130 0.01
246 161 0.01
247 124 0.01
248 165 0.01
249 101 0.01
250 100 0.01
251 73 0.01
252 84 0.01
253 77 0.01
254 71 0.01
255 235 0.02
256 180 0.01
257 206 0.02
258 264 0.02
259 725 0.06
260 1974 0.15
261 3393 0.26
262 756 0.06
263 234 0.02
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (261 bp):
AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTA
TCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACAC
CTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC
A
Found at i:342512 original size:19 final size:19
Alignment explanation
Indices: 342475--342514 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
342465 AACAAAAATA
*
342475 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
342494 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
342513 CT
1 CT
342515 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:342687 original size:19 final size:19
Alignment explanation
Indices: 342650--342687 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
342640 TAACAAAAAA
*
342650 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
342669 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
342688 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:342774 original size:19 final size:19
Alignment explanation
Indices: 342737--342776 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
342727 AACAAAAATA
*
342737 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
342756 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
342775 CT
1 CT
342777 GAATCCAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:342995 original size:87 final size:87
Alignment explanation
Indices: 342902--343118 Score: 364
Period size: 87 Copynumber: 2.5 Consensus size: 87
342892 AAATTGTTTT
* * *
342902 CACCTATCTTAAAAAGTTAAAGCTATATGAATACAGTCATTTTGCTTAGGCAAGCAAATTATTCT
1 CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCT
*
342967 AACAAAA-ATACTTAAAGAGTTA
66 AACAAAATA-ACTTAAACAGTTA
* *
342989 CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT
1 CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCT
343054 AACAAAATAACTTAAACAGTTA
66 AACAAAATAACTTAAACAGTTA
343076 CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
1 CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
343119 TAACAAAAAA
Statistics
Matches: 123, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
87 122 0.99
88 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (87 bp):
CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCT
AACAAAATAACTTAAACAGTTA
Found at i:343008 original size:153 final size:154
Alignment explanation
Indices: 342749--343031 Score: 462
Period size: 153 Copynumber: 1.8 Consensus size: 154
342739 TAAAGAGTTA
* * * * *
342749 CACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTAATTTTGCTTAGGCATGCCAATTATTCT
1 CACCTATCTTAAAAAGTTAAAGCTATATGAATACAGTAATTTTGCTTAGGCAAGCAAATTATTCT
342814 AACAAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTA-TGAATCCAATCATTTTT
66 AACAAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTACTGAATCCAATCATTTTT
342878 AACAAAAAAAACTTAAATTGTTTT
131 AACAAAAAAAACTTAAATTGTTTT
*
342902 CACCTATCTTAAAAAGTTAAAGCTATATGAATACAGTCATTTTGCTTAGGCAAGCAAATTATTCT
1 CACCTATCTTAAAAAGTTAAAGCTATATGAATACAGTAATTTTGCTTAGGCAAGCAAATTATTCT
* *
342967 AACAAAA-ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
66 AACAAAATA-ACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTA-CTGAATCCAATCATTT
343031 T
129 T
343032 GCTTAGGCAT
Statistics
Matches: 119, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
152 1 0.01
153 103 0.87
155 15 0.13
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.33
Consensus pattern (154 bp):
CACCTATCTTAAAAAGTTAAAGCTATATGAATACAGTAATTTTGCTTAGGCAAGCAAATTATTCT
AACAAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTACTGAATCCAATCATTTTT
AACAAAAAAAACTTAAATTGTTTT
Found at i:343014 original size:19 final size:19
Alignment explanation
Indices: 342977--343016 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
342967 AACAAAAATA
*
342977 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
342996 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
343015 CT
1 CT
343017 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:343101 original size:19 final size:19
Alignment explanation
Indices: 343064--343103 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
343054 AACAAAATAA
*
343064 CTTAAACAGTTACACCTAT
1 CTTAAACAGTTAAACCTAT
* *
343083 CTTAAAGAGTTAAAGCTAT
1 CTTAAACAGTTAAACCTAT
343102 CT
1 CT
343104 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (19 bp):
CTTAAACAGTTAAACCTAT
Found at i:343142 original size:67 final size:66
Alignment explanation
Indices: 343053--343185 Score: 212
Period size: 67 Copynumber: 2.0 Consensus size: 66
343043 CCAATTATTC
* * * *
343053 TAACAAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTT
343118 T
66 T
*
343119 TAACAAAAAAAACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATT
1 TAAC-AAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATT
343184 TT
65 TT
343186 GCTTAGGCAT
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
66 4 0.07
67 57 0.93
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.32
Consensus pattern (66 bp):
TAACAAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTT
T
Found at i:343166 original size:154 final size:153
Alignment explanation
Indices: 342966--343272 Score: 517
Period size: 154 Copynumber: 2.0 Consensus size: 153
342956 CAAATTATTC
* * * *
342966 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAAAACTTAAAGAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTT
*
343031 TGCTTAGGCATGCCAATTATTCTAAC-AAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTA
66 TGCTTAGGCATGCCAATTATTCTAACAAAAAT-ACTTAAACAGTTACACCTACCTTAAAGAGTTA
343095 AAGCTATCTGAATCCAGTCATTTT
130 AAGCTATCTGAATCCAGTCATTTT
*
343119 TAACAAAAAAAACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATT
1 TAAC-AAAAAAACTTAAAGAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATT
* *
343184 TTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTATACCTACCTTAAAGAGTTA
65 TTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAACAGTTACACCTACCTTAAAGAGTTA
343249 AAGCTATCTGAATCCAGTCATTTT
130 AAGCTATCTGAATCCAGTCATTTT
343273 GCTTAGGCAT
Statistics
Matches: 144, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
153 4 0.03
154 135 0.94
155 5 0.03
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (153 bp):
TAACAAAAAAACTTAAAGAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTT
TGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAACAGTTACACCTACCTTAAAGAGTTAA
AGCTATCTGAATCCAGTCATTTT
Found at i:343229 original size:87 final size:87
Alignment explanation
Indices: 343119--344752 Score: 2515
Period size: 87 Copynumber: 18.8 Consensus size: 87
343109 CAGTCATTTT
* * * * *
343119 TAACAAAAAAAACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATT
1 TAAC-AAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATT
343184 TTGCTTAGGCATGCCAATTATTC
65 TTGCTTAGGCATGCCAATTATTC
* *
343207 TAACAAAAATACTTAAAGAGTTATACCTACCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
343272 TGCTTAGGCATGACAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* *
343294 TAAAAAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATA
1 T-AACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCAT-
*
343359 TTTGCTTAGGCATGCCAATTATAC
64 TTTGCTTAGGCATGCCAATTATTC
* * *
343383 TAACAAAAATACTTAAAGAGTTACTCATTTCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
* **
343448 TGATTAGGCATATCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* * * * *
343470 TAACAAAAAAACTTAAGGAGTTACACCTATCTTTAAGAGTTAAAGCTATATGAATCCAGCCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
* *
343535 TGCTTAGGCATGCCAGTTTTTC
66 TGCTTAGGCATGCCAATTATTC
* *
343557 TAACAAAATTACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATT
343621 TTGCTTAGGCATGCCAATTATTC
65 TTGCTTAGGCATGCCAATTATTC
*
343644 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
343709 TGCTTAGGCATGCCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* *
343731 TAACAAAAATACTTAAAGAGTTACACATATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
* **
343796 TCCTTAGGCAAACCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
*
343818 TAACAAAAATAC-TAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
* *
343882 TGCTTAAGCATGCCAATTTTTC
66 TGCTTAGGCATGCCAATTATTC
* **
343904 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATTTGAATCCAAACATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
343969 TGCTTAGGCATGCCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* * *
343991 TAACAAAAATACTTAAAGAGTTACACCTATCTTTAAGAGTTAAAGCTATATGAATCCAATCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
* **
344056 TGCTTAGGCATTCCCTTTATTC
66 TGCTTAGGCATGCCAATTATTC
*
344078 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
344143 TGCTTAGGCATGCCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* * * ** * *
344165 TAACAAAACA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAAT
1 TAACAAAA-ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATT
*
344229 TTGCTTAGGCATG-CATATTTTTC
65 TTGCTTAGGCATGCCA-ATTATTC
*
344252 TAACAAAAATACTTAAAGAGTTACAACTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
344317 TGCTTAGGCATGCAAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* * * *
344339 TAAAAAAAATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
344404 TGCTTAGGCAAGCCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* **
344426 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTAAATCCAACCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
344491 TGCTTAGGCATGCCAACTATTC
66 TGCTTAGGCATGCCAATTATTC
* *
344513 TAACAAAAAAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
* *
344578 TGCTTAGGCAAGCAAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* *
344600 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATCTGAATCTAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
344665 TGCTTAGGCATGCCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
*
344687 TAAC-AAAATAACTTAAACG-GTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCAT
1 TAACAAAAAT-ACTTAAA-GAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCAT
344750 TTT
64 TTT
344753 TAACAAAAAA
Statistics
Matches: 1405, Mismatches: 130, Indels: 23
0.90 0.08 0.01
Matches are distributed among these distances:
86 88 0.06
87 1170 0.83
88 124 0.09
89 23 0.02
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (87 bp):
TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
TGCTTAGGCATGCCAATTATTC
Found at i:343343 original size:19 final size:19
Alignment explanation
Indices: 343306--343345 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
343296 AAAAAAAATA
*
343306 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
343325 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
343344 CT
1 CT
343346 GAATCCAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:343605 original size:19 final size:19
Alignment explanation
Indices: 343568--343607 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
343558 AACAAAATTA
*
343568 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
* *
343587 CTTAAAGTGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
343606 CT
1 CT
343608 AATTCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:343692 original size:19 final size:19
Alignment explanation
Indices: 343655--343694 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
343645 AACAAAAATA
*
343655 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
343674 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
343693 CT
1 CT
343695 GAATCTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:343952 original size:19 final size:19
Alignment explanation
Indices: 343915--343952 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
343905 AACAAAAATA
*
343915 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
343934 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
343953 TTGAATCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:344126 original size:19 final size:19
Alignment explanation
Indices: 344089--344126 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
344079 AACAAAAATA
*
344089 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
344108 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
344127 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:344287 original size:19 final size:19
Alignment explanation
Indices: 344263--344302 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
344253 AACAAAAATA
344263 CTTAAAGAGTTACAA-CTAT
1 CTTAAAGAGTTA-AAGCTAT
344282 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAAGCTAT
344301 CT
1 CT
344303 GAATCCAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAAGCTAT
Found at i:344387 original size:19 final size:19
Alignment explanation
Indices: 344350--344389 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
344340 AAAAAAAATA
* * *
344350 CTTATAGAGTTACATCTAT
1 CTTAAAGAGTTAAAGCTAT
344369 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAAGCTAT
344388 CT
1 CT
344390 GAATCTAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
CTTAAAGAGTTAAAGCTAT
Found at i:344474 original size:19 final size:19
Alignment explanation
Indices: 344437--344476 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
344427 AACAAAAATA
*
344437 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
344456 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
344475 CT
1 CT
344477 AAATCCAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:344561 original size:19 final size:19
Alignment explanation
Indices: 344524--344561 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
344514 AACAAAAAAA
*
344524 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
344543 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
344562 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:344648 original size:19 final size:19
Alignment explanation
Indices: 344611--344650 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
344601 AACAAAAATA
* *
344611 CTTAAAGAGTTACACCTAT
1 CTTAAAGAATTAAACCTAT
*
344630 CTTAAAGAATTAAAGCTAT
1 CTTAAAGAATTAAACCTAT
344649 CT
1 CT
344651 GAATCTAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (19 bp):
CTTAAAGAATTAAACCTAT
Found at i:344766 original size:66 final size:66
Alignment explanation
Indices: 344687--344818 Score: 201
Period size: 66 Copynumber: 2.0 Consensus size: 66
344677 CCAATTATTC
* * * *
344687 TAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTT
1 TAACAAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTT
344752 T
66 T
* * *
344753 TAACAAAAAAACTTAAATAGTTACACTTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTT
344818 T
66 T
344819 GCTTAGGCAA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (66 bp):
TAACAAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTT
T
Found at i:344856 original size:87 final size:87
Alignment explanation
Indices: 344753--345045 Score: 453
Period size: 87 Copynumber: 3.4 Consensus size: 87
344743 CAATCATTTT
* * * * *
344753 TAACAAAAAAACTTAAATAGTTACACTTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
* *
344818 TGCTTAGGCAAGCAAATTATTC
66 TGCTTAGGCATGCCAATTATTC
344840 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
344905 TGCTTAGGCATCCCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
* **
344927 TAAC-AAAATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAACCATT
1 TAACAAAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATT
344991 TTGCTTAGGCATGCCAATTATTC
65 TTGCTTAGGCATGCCAATTATTC
* *
345014 TAACAAAAATACTTAAAGAGTTAAAGCTATCT
1 TAACAAAAATACTTAAAGAGTTACACCTATCT
345046 GAATCCAACC
Statistics
Matches: 189, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
86 5 0.03
87 179 0.95
88 5 0.03
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (87 bp):
TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
TGCTTAGGCATGCCAATTATTC
Found at i:344878 original size:153 final size:153
Alignment explanation
Indices: 344600--344905 Score: 492
Period size: 153 Copynumber: 2.0 Consensus size: 153
344590 CAAATTATTC
* * *
344600 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATCTGAATCTAGTCATTT
1 TAACAAAAAAACTTAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATATGAATCCAGTCATTT
* *
344665 TGCTTAGGCATGCCAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAA
66 TGCTTAGGCAAGCAAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAA
344730 AGCTATCTGAATCCAATCATTTT
131 AGCTATCTGAATCCAATCATTTT
* *
344753 TAACAAAAAAACTTAAATAGTTACACTTATCTTAAA-AAGTTAAAGCTATATGAATCCAGTCATT
1 TAACAAAAAAACTTAAAGAGTTACACCTATCTTAAAGAA-TTAAAGCTATATGAATCCAGTCATT
344817 TTGCTTAGGCAAGCAAATTATTCTAACAAAA-ATACTTAAA-GAGTTACACCTATCTTAAAGAGT
65 TTGCTTAGGCAAGCAAATTATTCTAACAAAATA-ACTTAAACG-GTTACACCTATCTTAAAGAGT
*
344880 TAAAGCTATCTGAATCCAGTCATTTT
128 TAAAGCTATCTGAATCCAATCATTTT
344906 GCTTAGGCAT
Statistics
Matches: 142, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
152 4 0.03
153 138 0.97
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (153 bp):
TAACAAAAAAACTTAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATATGAATCCAGTCATTT
TGCTTAGGCAAGCAAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAA
AGCTATCTGAATCCAATCATTTT
Found at i:344888 original size:19 final size:19
Alignment explanation
Indices: 344851--344890 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
344841 AACAAAAATA
*
344851 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
344870 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
344889 CT
1 CT
344891 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:344975 original size:19 final size:19
Alignment explanation
Indices: 344938--344977 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
344928 AACAAAATAA
*
344938 CTTAAACAGTTACACCTAT
1 CTTAAACAGTTAAACCTAT
* *
344957 CTTAAAGAGTTAAAGCTAT
1 CTTAAACAGTTAAACCTAT
344976 CT
1 CT
344978 GAATCCAACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (19 bp):
CTTAAACAGTTAAACCTAT
Found at i:345066 original size:68 final size:68
Alignment explanation
Indices: 344957--345113 Score: 287
Period size: 68 Copynumber: 2.3 Consensus size: 68
344947 TTACACCTAT
*
344957 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
345022 ATA
66 ATA
345025 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
345090 ATA
66 ATA
* *
345093 CTTAAAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
345114 TAAATAGTGA
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (68 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
ATA
Found at i:345078 original size:155 final size:155
Alignment explanation
Indices: 344870--345200 Score: 520
Period size: 155 Copynumber: 2.1 Consensus size: 155
344860 TTACACCTAT
** *
344870 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATCCCAATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATCCAAATTATTCTAACAAAA
* *
344934 ATAACTTAAACAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAG
66 AT-ACTTAAACAGTTACACCTATCTTAAAGAGTGAAAGCTAACTGAATCCAACCATTTTGCTTAG
344999 GCATGCCAATTATTCTAACAAAAATA
130 GCATGCCAATTATTCTAACAAAAATA
*
345025 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATCCAAATTATTCTAACAAAA
* * **
345090 ATACTTAAAGAGTTACACCTATCTTAAATAGTGAAAGCTAACTGAATCCAGTCATTTTGCTTAGG
66 ATACTTAAACAGTTACACCTATCTTAAAGAGTGAAAGCTAACTGAATCCAACCATTTTGCTTAGG
* *
345155 CATGCTAATTTTTCTAACAAAAATA
131 CATGCCAATTATTCTAACAAAAATA
* *
345180 CTTAAAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
345201 TAATGAGTTA
Statistics
Matches: 161, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
155 156 0.97
156 5 0.03
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.32
Consensus pattern (155 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATCCAAATTATTCTAACAAAA
ATACTTAAACAGTTACACCTATCTTAAAGAGTGAAAGCTAACTGAATCCAACCATTTTGCTTAGG
CATGCCAATTATTCTAACAAAAATA
Found at i:345171 original size:87 final size:87
Alignment explanation
Indices: 345025--347749 Score: 3897
Period size: 87 Copynumber: 31.4 Consensus size: 87
345015 AACAAAAATA
** *
345025 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
345090 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * *
345112 CTTAAATAGTGAAAGCTAACTGAATCCAGTCATTTTGCTTAGGCATGCTAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
345177 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
345199 CTTAATGAGTTAAAGCTATATGAATCCAATCATTTTGCATT-GGCATGCCAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGC-TTAGGCATGCCAATTATTCTAACAAA
*
345263 AATACTTAAAGAGTTACACCTAC
65 AATACTTAAAGAGTTACACCTAT
* *
345286 CTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
345351 ATACTTAAAGAGTTACACATAT
66 ATACTTAAAGAGTTACACCTAT
*
345373 CTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
345437 AATACTTAAAGAGTTACACCTAT
65 AATACTTAAAGAGTTACACCTAT
*
345460 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCTAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
345525 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
345547 GTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
345612 ATAC-TAAAGAGATACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * *
345633 CTTAAAGAGTTAAAGCTAACTGAATCCAATCATTTTGCTTAAGCATGCCAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
345698 ATACTTAAAGAGTTAAACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
345720 CTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
345785 ATACTTAAAGAGTTACTCCTAT
66 ATACTTAAAGAGTTACACCTAT
* * ** * *
345807 CTTTAAGAGTTAAAGCTATATGAATCCAACCATTTTGCTTAGGCATGCCCATTATTCTAACGAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
345872 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * *
345894 CTTAAAGAGTTAAAGCTATATGATTCCAGTAATTTTGCTTAGGCTTGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
345959 A-ACCCTAAAGAGTTACACCTAT
66 ATA-CTTAAAGAGTTACACCTAT
* * ** * * * *
345981 ATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTAAGGCATG-CATATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAA
* *
346045 ATTACTTAAAGAGTTACAACTAT
65 AATACTTAAAGAGTTACACCTAT
* * * * * *
346068 CTTAAAGAGTTAAAGCAATATGAATCCAGCCATTTTTCTTAGGCATGCAAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT-AACAAA
* *
346133 AAAACTTAAAGAGTTACATCTAT
65 AATACTTAAAGAGTTACACCTAT
* * * * *
346156 CTAAAAGAGTTAAACCTATCTGAATCTAGTCATTTTTCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
346221 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
346243 CTTAAAGAGTTAAAGCTATCTAAATCCA-CCATTTTGCATAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
346307 AAACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * * *
346329 CTTAAAGATTTAAAGCTATATGAATCCAGCCATTTTGCTTAGGCAAGCAAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
346394 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
346416 CTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
346481 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * * **
346503 CTTTAAGAGTTAAAGCTATATGAAACCAATCATTTTGCTTAGGCATTCCCTTTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
346568 ATACTTAAAGTGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
346590 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATACCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
346655 CA-CCTTAAAGAGTTACACCTAT
66 -ATACTTAAAGAGTTACACCTAT
* * ** * * *
346677 ATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAA
* *
346741 AATACTTAAAGAGTTACAACTAC
65 AATACTTAAAGAGTTACACCTAT
* * *
346764 CTTAAATAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
346829 ATACTTAAAGAGTTACACATAT
66 ATACTTAAAGAGTTACACCTAT
* * *
346851 CTTAAAGTGTTAAAGCTATCT-AATTCTAGTCATTTTGCTTAGGCTTGCCAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
*
346915 AATACTTAAAGAGTTAAACCTAT
65 AATACTTAAAGAGTTACACCTAT
346938 CTTAAAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
347002 ATAGTTAAAGAGTTACTCCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * *
347024 CTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATTCCCATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
347089 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * *
347111 CTTAAAGAGTTAAAGCTATATGATTCCAGTAATTTTGCTTAGGCTTGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
347176 A-ACCCTAAAGAGTTACACCTAT
66 ATA-CTTAAAGAGTTACACCTAT
* * ** * * *
347198 ATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTAAGGCATG-CATATT-TTCTAAC-AA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAA
347260 AATACTTAAAGAGTTACA-CTAT
65 AATACTTAAAGAGTTACACCTAT
* * * * *
347282 C-TAAAGAGTTAAAGCAATATGAATCCAGCCATTTTTCTTAGGCATGCAAATTATTCTAA-AAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
347345 AAACTTAAAGAGTTACATCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * * *
347367 CTAAAAGAGTTAAACCTATCTGAATCTAGTCATTTTTCTTAGGCAAGCCAATTATTCTAACAGAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
347432 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * ** *
347454 CTTAAAGAGTTAAAGCTATCTAAATTCAACCATTTTGCATAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
347519 AAACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * *
347541 CTTAAAGATTTAAAGCTATATGAATCCAGCCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
347606 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
347628 C-TAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
347691 ATAACTTAAACG-GTTACACCTAT
66 AT-ACTTAAA-GAGTTACACCTAT
347714 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
347750 TACAAAAAAA
Statistics
Matches: 2349, Mismatches: 259, Indels: 60
0.88 0.10 0.02
Matches are distributed among these distances:
83 38 0.02
84 30 0.01
85 27 0.01
86 378 0.16
87 1792 0.76
88 84 0.04
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (87 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
ATACTTAAAGAGTTACACCTAT
Found at i:345321 original size:174 final size:174
Alignment explanation
Indices: 345025--353826 Score: 6146
Period size: 174 Copynumber: 50.0 Consensus size: 174
345015 AACAAAAATA
* * *
345025 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * *
345090 ATACTTAAAGAGTTACACCTATCTTAAATAGTGAAAGCTAACTGAATCCAGTCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* *
345155 CATGCTAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
*
345199 CTTAATGAGTTAAAGCTATATGAATCCAATCATTTTGCATT-GGCATGCCAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGC-TTAGGCATGCCAATTATTCTAACAAA
* *
345263 AATACTTAAAGAGTTACACCTACCTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAG
65 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* *
345328 GCATGCCAATTATTCTAAAAAAAATACTTAAAGAGTTACACATAT
130 GCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * *
345373 CTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATATGAA-TCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
345437 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
65 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
*
345502 GCATGCTAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
130 GCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * * *
345547 GTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * *
345612 ATAC-TAAAGAGATACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCAATCATTTTGCTTAAG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* *
345676 CATGCCAATTTTTCTAACAAAAATACTTAAAGAGTTAAACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* *
345720 CTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * **
345785 ATACTTAAAGAGTTACTCCTATCTTTAAGAGTTAAAGCTATATGAATCCAACCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* *
345850 CATGCCCATTATTCTAACGAAAATACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * *
345894 CTTAAAGAGTTAAAGCTATATGATTCCAGTAATTTTGCTTAGGCTTGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * ** * * *
345959 A-ACCCTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTAAG
66 ATA-CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* * *
346023 GCATG-CATATTTTTCTAACAAAATTACTTAAAGAGTTACAACTAT
130 GCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* ** * * *
346068 CTTAAAGAGTTAAAGCAATATGAATCCAGCCATTTTTCTTAGGCATGCAAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCT-AACAAA
* * * * * *
346133 AAAACTTAAAGAGTTACATCTATCTAAAAGAGTTAAACCTATCTGAATCTAGTCATTTTTCTTAG
65 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
*
346198 GCAAGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
130 GCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * *
346243 CTTAAAGAGTTAAAGCTATCTAAATCC-ACCATTTTGCATAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * *
346307 AAACTTAAAGAGTTACACCTATCTTAAAGATTTAAAGCTATATGAATCCAGCCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* * *
346372 CAAGCAAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* *
346416 CTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * *
346481 ATACTTAAAGAGTTACACCTATCTTTAAGAGTTAAAGCTATATGAAACCAATCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* ** *
346546 CATTCCCTTTATTCTAACAAAAATACTTAAAGTGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* *
346590 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATACCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * ** * *
346655 CA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAG
66 -ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* * *
346719 GCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTACAACTAC
130 GCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * *
346764 CTTAAATAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * *
346829 ATACTTAAAGAGTTACACATATCTTAAAGTGTTAAAGCTATCT-AATTCTAGTCATTTTGCTTAG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAG
* *
346893 GCTTGCCAATTATTCTAACAAAAATACTTAAAGAGTTAAACCTAT
130 GCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
*
346938 CTTAAAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * * *
347002 ATAGTTAAAGAGTTACTCCTATCTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* *
347067 CATTCCCATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * *
347111 CTTAAAGAGTTAAAGCTATATGATTCCAGTAATTTTGCTTAGGCTTGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * ** * * *
347176 A-ACCCTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTAAG
66 ATA-CTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
347240 GCATG-CATATT-TTCTAAC-AAAATACTTAAAGAGTTACA-CTAT
130 GCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* ** * *
347282 C-TAAAGAGTTAAAGCAATATGAATCCAGCCATTTTTCTTAGGCATGCAAATTATTCTAA-AAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * * * *
347345 AAACTTAAAGAGTTACATCTATCTAAAAGAGTTAAACCTATCTGAATCTAGTCATTTTTCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* *
347410 CAAGCCAATTATTCTAACAGAAATACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * * *
347454 CTTAAAGAGTTAAAGCTATCTAAATTCAACCATTTTGCATAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * *
347519 AAACTTAAAGAGTTACACCTATCTTAAAGATTTAAAGCTATATGAATCCAGCCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* *
347584 CAAGCAAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * *
347628 C-TAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
347691 ATAACTTAAACG-GTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA-TTT--TTA
66 AT-ACTTAAA-GAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTA
**** ** * *** * * *
347752 --CAAAAAAACTTAAATAGTTACACCTAT-CTTAAAAAGTTAAAGCTAT
129 GGCATGCCAA-TT--ATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * ** * *** * ** * *** * * ** *
347798 ATGAATCCAATCATTTTGCT-TAGGAAAGCAA--ATTATT-CTAACAAAAATACTTAAAGAGT-T
1 CTTAA-AGAGT--TAAAGCTATATGAATCCAATCATT-TTGCT--TAGGCATGC-CAATTATTCT
*** * * * * ** *** ** *
347858 -ACACCTAT-CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCT-TAGGCATGCCA---A
59 AACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAAT-CCAGTCA
* **** ** * ** * *
347917 TTATT-C-TA-ACAAAATAACTTAAACAGTTACAACTAT-CTTAAAGAGTTAAAGCTAT
120 TT-TTGCTTAGGCATGCCAA-TTATTC--TAACAAAAATACTTAAAGAGTTACACCTAT
* ** ** * ** * ** *** * * **
347972 CTGAATCCA-ACCATATTGCT-TAGGCTTGCCAATTATTCTAAC--AAAAATACTTAAAGATT-T
1 CTTAA---AGA-GTTAAAGCTATATGAAT-CCAATCATT-TTGCTTAGGCATGC-CAATTATTCT
*** * ** * * * * **
348032 AA-AGCTAT-CTGAATCCA--TCCA-TTTTGCTT--AG-GTATGCAAA-TTATTCT-AA--CAAA
59 AACAAAAATACTTAA-AGAGTTACACCTAT-CTTAAAGAGT-T--AAAGCTA-TCTGAATCCAGT
* * **** ** ** * * ** * *
348085 AATACTTAAAGAGTTACACCTATCT-TATATAGTGAAAACTAACTGAATCAAGTCATTTTGCTTA
118 CAT-TTTGCTTAGGCATGCCAAT-TAT-TCTA-ACAAAAAT-ACT---TAAAG--A----G-TTA
*
348149 GGCATGCCAATT
168 --CA--CCTA-T
* * * * * * * * * ** * ** * * * * *
348161 TTTCTAACA--AAAATGCT-TAAAGAGT-TATACCTATCTTAATGAGATAAAGCTATATGAATCC
1 CTT-AAAGAGTTAAA-GCTAT-ATGAATCCA-ATC-ATTTTGCTTAG-GCATGCCA-ATTATTCT
*** * * ** * * * * *
348222 AATC-ATTTTGCTTAGGAATGCTAATTATTCTAACAAAAATACTTATAGAGTTACACCTACCTTA
59 AA-CAAAAATACTTA--AA-G--AGTTA--C--AC--CTAT-CTTAAAGAGTTAAAGCTATCTGA
* *** ** * * * * * *
348286 A---AG-AATTAAAACTATCTGAAT-CCAATCATTTTGCTTAGGCATGCCAATTATTCTAAA-A-
111 ATCCAGTCATT-TTGCT-TAGGCATGCCAAT--TATT-C-TA-ACA---AAAATACT-TAAAGAG
**
348344 --A-AAATA-
165 TTACACCTAT
* * * * ** * * * *
348350 CTTAAAGAGTTACACCTATCTTAA-AGAGTTAAAGTTAT-C-T--GAAT-CCAATCATATTTGCT
1 CTTAAAGAGTTAAAGCTATATGAATCCA-AT-CA-TTTTGCTTAGGCATGCCAAT--TA-TT-C-
* *** * * * *** ** * * **
348409 TAGGCATGCCA-A-TT--ATACTAACAAAAATACTTAAAGAGTT-ACTCATTTCTTAA-AGAGTT
58 TA-ACA-AAAATACTTAAAGAGTTACACCTAT-CTTAAAGAGTTAAAGC-TATCTGAATCCAG-T
* ** *
348468 AAAGCTATCTGAATCCAGTCATTTTG-ATTAGGCATATCATTATTCTAACAAAAA-ACTTAAAGA
118 ----C-AT-T---T--TG-C-TTAGGCA-T--GC-CA--ATTATTCTAACAAAAATACTTAAAGA
348531 GTTACACCTAT
164 GTTACACCTAT
* * * *
348542 CTTTAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAGTTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
348607 ATACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCTTAG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAG
* *
348671 TCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCCAT
130 GCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * *
348716 CTTAAAGAGATAAAGCTATCTGAATCCAGTCATTTTCCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
348781 ATACTTAAAGAGTTACACCCATCTTAAAGAGTTAAA-CTATCTTAATCCAGTCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
*
348845 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCGAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * * *
348889 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTTTGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * *
348954 ATAC-TGAAGAGTTACACCTATCTTAAAGAGTTAAAGCTAACTGAATCCA-TCATTTTGCTTAAG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
*
349017 CATG-CAATTTTTCTAACAAAAATACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* *
349060 CTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * *
349125 ATACTTAAAGAGTTACACCTATCTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* * *
349190 CATTCCCATTATTCTAACAAAAATACTTAAAGAGTTAAACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* *
349234 CTTAAAGAGTTAAAACTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * ** * *
349299 CA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAG
66 -ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* *
349363 GCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTACAACTAT
130 GCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
** * *
349408 CTTAAAGAGTTAAAGCTATCCGAATCCAATCATTTTGCTTAGGCATGCAAATTTTTCTAA-AAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * *
349472 ATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* * * *
349537 CAAGCCAATTATTCTAACAAAATTACTTAAAGAGTTACACTTGT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * * * *
349581 CTTAAGGAGTTAAAGCTATCTAAATTCAACCATTTTGCTTAGGCATGCCAACTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
349646 AAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* * *
349711 CAAGCAAATTATTCTAACAAAAATACATAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * *
349755 CTTAAAGAATTAAAGCTATATGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
349819 ATAACTTAAACG-GTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA-TTT--TTA
66 AT-ACTTAAA-GAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTA
* **** ** * *** * * *
349880 -ACAAAAAAACTTAAATAGTTACACCTATA-TTAAAAAGTTAAAGCTAT
129 GGCATGCCAA-TT--ATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * ** *** * * * ** *** * * ** *
349927 ATGAATCCAGTCATTTTGCT-TAGGCAATCAAATTATTCTAAC--AAAAATACTTAAAGAGT-T-
1 CTTAA-AGAGT--TAAAGCTATATG-AATCCAATCATT-TTGCTTAGGCATGC-CAATTATTCTA
*** * * * ** * ** ** *
349987 ACACCTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTGCT-TAGGCATGCCA---ATT
60 ACAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGTTA-AAGCTATCTGAAT-CCAGTCATT
* **** *** * *** * *
350047 ATT-C-TA-ACAAAATAACTTAAAGAGTTACACCTAT-CTTAAAGAGTTAAAGCTAT
122 -TTGCTTAGGCATGCCAA-TT--ATTCTAACAAAAATACTTAAAGAGTTACACCTAT
** * * * *** * *
350100 CTGAATCCAACCATTTTGCTTAGGCATGCCTAT-T-ATTCTAA-CAAAAATACTTAAAGAGTTAA
1 CT---T--AA--A--GAG-TTA---AAG-CTATATGAATCCAATC-ATTTTGCTT--AG-G--CA
* * * * * *** * * * ** *
350162 AG-CTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAAATACTTAAAGTG
46 TGCCAAT-T-ATTCTAACAAAAATACTTA---AAG--AGTTA--C--AC--CTAT-CTTAAAGAG
* * * ** * ** * * * * * ** *** *
350226 TTACACCTATCTTAA-AAAGTGA--AAGCTAACTGAAT-CCAGTCATT-TTGCTTAGGCATGC-T
97 TTAAAGCTATCTGAATCCAGTCATTTTGCTTA-GGCATGCCAATTATTCTAAC--AAAAATACTT
**** ***
350285 AATTTTTCTAACAAAAAT
159 AAAGAGT-T-ACACCTAT
* * * * * * *** * * * **
350303 ACTTAAAGAGTTACACCTATCTTAAT-GAGT--TAAAGCTATATG-A-ACACAATGATT-TTGCA
1 -CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCT-TAGGCATGC-CAATTATTCTAACA
*** * ** * *** * * * * ** *
350362 TTGGCATGGC--AATTATTCTAACAAAAATACTTAAAGAGTTACACCTACCTTAA-AGAGT--TA
63 --AAAAT-ACTTAAAGAGT-T-ACACCTAT-CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATT
** ** * * * * * * **
350422 AAGCTATCTGAAT-CCAATCATTTTGCTTAGGCATGCCAATTATTCTAAA-A---A-AAATA-
122 TTGCT-TAGGCATGCCAAT--TATT-C-TA-ACA---AAAATACT-TAAAGAGTTACACCTAT
* * * *
350478 CTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTATCTAATTCCAGTCATTTTCTTAGGCATG
1 CTTAAAGAGTTA-A---AGC-TATA-TG----A---ATCCAA-T-CA-T--TTTGCTTAGGCATG
* * *
350543 CCAATTATTCTAAAAAAAATATTTAAAGAGTTACACCTAACTTAAAGAGTTAAAGCTATCTGAAT
48 CCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
**
350608 CCAGTCATTTTGCTTACCCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
113 CCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * * *
350670 CTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTCCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * *
350735 ATAC-TAAAGAGTTACATCTATCTTAAAGAGTTAAAGCTAACTGAATCCAGCCATTTTGCTTAAG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
350799 CATG-CAAGTT-TTCTAACAAAAATACTTAAAGAGTTACACCTAT
131 CATGCCAA-TTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * * *
350842 CTTTAAGAGTTAAAGCTTTTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAATAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * * *
350907 AAACTTAAATAGTTACACCTATCTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* ** * *
350972 CATTCCCTTTATTCTAACAAAAATACTTGAAGTGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* *
351016 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATACCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * * * ** * *
351081 CA-CCTTAAAAAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAGTAGAGTAAATTTGCTTAG
66 -ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* *
351145 GCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTACAACTAT
130 GCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * * *
351190 CTTAAAGAGTTAATGCTATCTGAATCCAGTCATTTTGCTTAGGCATG-TAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCT---AACA
* * *
351254 AAAATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTT
63 AAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTT
* *
351319 AGGCAAGCCAATTATTCTAACAAAAATAC-TGAAGAGTTACACCTAT
128 AGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * *
351365 CTTAAAGAGTTAAAGCTA-ACTGAATCCAGTCATTTTGCTTAAGCATG-CAATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATA-TGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
* *
351428 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAACTATTTGAATCCAGTCA-TTTGCTTAG
65 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
351492 GCATGCCAATTATTCTAACAAAAATAC-TAAAGAGTTACACCTAT
130 GCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * *
351536 CTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAAGCATTCCCATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
351601 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
*
351666 CATGCCAATTATTCTAACAAAACA-CCTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAA-ATACTTAAAGAGTTACACCTAT
* * * ** * * * *
351710 ATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAA
* *
351774 AATACTTAAAGAGTTACAACTATCTTAAAGAGTTAAAGCTATCTGTATCCAGTCATTTTGCTTAG
65 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* * * *
351839 GCATGCAAATTATTCTAAAAAAAAATACTTATAGAGTTACATCTAT
130 GCATGCCAATTATTCT-AACAAAAATACTTAAAGAGTTACACCTAT
* * * * *
351885 CTTAAAGAGTTAAAGCTATTTGAGTCTAGTCATTTTGCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * **
351950 TTACTTAAAGAGTTACACTTATCTTAAAGAGTTAAAGCTATCTAAATCCAACCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
*
352015 CATGCCAATTATTCTAACAAAAAAACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * *
352059 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * *
352124 ATACATAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATATGAATCTAGTCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
352189 CATGCCAATTATTCTAAC-AAAATAACTTAAACG-GTTACACCTAT
131 CATGCCAATTATTCTAACAAAAAT-ACTTAAA-GAGTTACACCTAT
* * * * ** ** * * * *
352233 CTTAAAGAGTTAAAGCTATCTGAATCCAGTAATTTTAAC--A-AAAAACTTAAATAGT-T-ACAC
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTT-GCTTAGGCATGC-CAATTATTCTAACAA
** * * * * * ** *** ** ** * * *
352293 CTAT-CTTAAAAAGTTAAAGCTATATGAATCCAGTCATTTTGCT-TAGGCAATAAAATTATTCTA
64 AAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTG-AATCCAGTCATT-TT
* *** * * ** * *** * * *
352356 AC--AAAAATACTTAAAGAGT-T-ACACCTAT-CTTAAACAGTTAAAGCTAT
124 GCTTAGGCATGC-CAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* ** * ** * * * * **** ***
352403 CTGAATCCAGTCAATTTTCT-TAGGCATGCCAAT--TATT-C-TA-ACAAAATAACTTAAAGAGT
1 CTTAA-AGAGTTAA--AGCTATATGAAT-CCAATCATTTTGCTTAGGCATGCCAA-TT--ATTCT
* *** * * ** * *
352462 TACACCTAT-CTTAAAGAGTTAAAGCTATCTGGATCCAACCATTTGCTT-AGGC-ATGCT-ATTC
59 AACAAAAATACTTAAAGAGTTACACCTATCT---T--AA--A-GAG-TTAAAGCTAT-CTGAATC
* * *** * * * * * * * *** * * *
352523 TA-ACAAAAATACTTAAAGAGTTAAAG-CTATCTGAATCCAACCATTTTGCTTAGGCATGCAAAT
114 CAGTC-ATTTTGCTT--AG-G--CATGCCAAT-T-ATTCTAACAAAAATACTTA---AAG--AGT
**
352586 TATTCTAACAAAAAT
166 TA--C--AC--CTAT
* * * * *
352601 ACTTAAAG-GTTACACCTATCTTAAAAAGTGAAGCTAACTGAATC-TCATTTGCTTAAGCATGCT
1 -CTTAAAGAGTTA-A---AGC-T--ATA-TGAA--T--C-CAATCAT--TTTGCTTAGGCATGCC
* * * *
352664 AATTTTTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAATGAGTTAAAGCTATATGAATAC
50 AATTATTCTAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCC
* * *
352729 AATGATTTTGCATT-GGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAC
115 AGTCATTTTGC-TTAGGCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
*
352789 CTTAAAGAGTTAAAGCTATCTGAATCCAATCA-TTTGCTTAGGCATG-CAATTATTCT---AAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
352849 ATACTTAAAGAGTTACACCTATCTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCTTAG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAG
*
352913 GCATGCCAATTATTCTAA-AAAAATATTTAAAGAGTTACACCTAT
130 GCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * *
352957 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGCCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
353022 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTCCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
* **
353087 CAAGCCAATTATTCTAACAAAAATAC-TAAAGAGTTACATTTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * *
353130 CTTAAAGAGTTAAAGCTA-ACTGAATCCAGTCATTTTGCTTAAGCATG-CAATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATA-TGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
*
353193 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAG
65 AATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* *
353258 GCATGCCAATTATTCTAATAAAAAAACTTAAAGAGTTACACCTAT
130 GCATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* *
353303 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATACCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * ** * *
353368 CA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAG
66 -ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* * *
353432 GCATG-CATATTTTTCTAACAAAAATACTTAAAGAGTTAGAACTAT
130 GCATGCCA-ATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* * * * * *
353477 CTTAAAGAGTTAATGCTATCTGAATCCAGTCATTTTGCATAGGCATGCAAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * *
353542 ATACTTATAGAGTTACATCTATCTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGG
66 ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
*
353607 CAAGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
131 CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
* *
353651 CTTAAAGAGTTAAATCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * * ** * *
353716 CA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAG
66 -ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAG
* * *
353780 GCATGCTTAATT-TTCTAACAAAAATACTTAAAGAGTTAAAGCTAT
130 GCATGC-CAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
353825 CT
1 CT
353827 GAATCCAGTC
Statistics
Matches: 6945, Mismatches: 1222, Indels: 922
0.76 0.13 0.10
Matches are distributed among these distances:
167 2 0.00
168 67 0.01
169 157 0.02
170 145 0.02
171 278 0.04
172 525 0.08
173 1447 0.21
174 3146 0.45
175 401 0.06
176 96 0.01
177 18 0.00
178 18 0.00
179 18 0.00
180 13 0.00
181 10 0.00
182 12 0.00
183 12 0.00
184 19 0.00
185 14 0.00
186 26 0.00
187 35 0.01
188 29 0.00
189 26 0.00
190 38 0.01
191 39 0.01
192 80 0.01
193 16 0.00
194 26 0.00
195 28 0.00
196 14 0.00
197 4 0.00
198 4 0.00
199 24 0.00
200 8 0.00
201 14 0.00
202 13 0.00
203 14 0.00
204 19 0.00
205 20 0.00
206 8 0.00
207 13 0.00
208 5 0.00
209 4 0.00
210 3 0.00
211 8 0.00
212 20 0.00
213 4 0.00
214 5 0.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (174 bp):
CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
ATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGG
CATGCCAATTATTCTAACAAAAATACTTAAAGAGTTACACCTAT
Found at i:345478 original size:19 final size:19
Alignment explanation
Indices: 345441--345480 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
345431 AACAAAAATA
*
345441 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
345460 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
345479 CT
1 CT
345481 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:345565 original size:19 final size:19
Alignment explanation
Indices: 345529--345565 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
345519 ACAAAAATAC
*
345529 TTAAAGAGTTACACCTATG
1 TTAAAGAGTTAAACCTATG
*
345548 TTAAAGAGTTAAAGCTAT
1 TTAAAGAGTTAAACCTAT
345566 CTGAATCCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
TTAAAGAGTTAAACCTATG
Found at i:345725 original size:19 final size:19
Alignment explanation
Indices: 345701--345738 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
345691 AACAAAAATA
345701 CTTAAAGAGTTAAACCTAT
1 CTTAAAGAGTTAAACCTAT
*
345720 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
345739 TTGAATCCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:345912 original size:19 final size:19
Alignment explanation
Indices: 345875--345912 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
345865 AACGAAAATA
*
345875 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
345894 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
345913 ATGATTCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:346174 original size:19 final size:19
Alignment explanation
Indices: 346140--346176 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
346130 AAAAAAACTT
* *
346140 AAAGAGTTACATCTATCTA
1 AAAGAGTTAAACCTATCTA
346159 AAAGAGTTAAACCTATCT
1 AAAGAGTTAAACCTATCT
346177 GAATCTAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (19 bp):
AAAGAGTTAAACCTATCTA
Found at i:346261 original size:19 final size:19
Alignment explanation
Indices: 346224--346263 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
346214 AACAAAAATA
*
346224 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
346243 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
346262 CT
1 CT
346264 AAATCCACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:346434 original size:19 final size:19
Alignment explanation
Indices: 346397--346434 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
346387 AACAAAAATA
*
346397 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
346416 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
346435 TTGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:346943 original size:19 final size:19
Alignment explanation
Indices: 346919--346956 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
346909 AACAAAAATA
346919 CTTAAAGAGTTAAACCTAT
1 CTTAAAGAGTTAAACCTAT
*
346938 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
346957 TGAATCCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:347129 original size:19 final size:19
Alignment explanation
Indices: 347092--347129 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
347082 AACAAAAATA
*
347092 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
347111 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
347130 ATGATTCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:347385 original size:19 final size:19
Alignment explanation
Indices: 347351--347387 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
347341 AAAAAAACTT
* *
347351 AAAGAGTTACATCTATCTA
1 AAAGAGTTAAACCTATCTA
347370 AAAGAGTTAAACCTATCT
1 AAAGAGTTAAACCTATCT
347388 GAATCTAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (19 bp):
AAAGAGTTAAACCTATCTA
Found at i:347472 original size:19 final size:19
Alignment explanation
Indices: 347435--347474 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
347425 AACAGAAATA
*
347435 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
347454 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
347473 CT
1 CT
347475 AAATTCAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:347645 original size:18 final size:18
Alignment explanation
Indices: 347611--347647 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
347601 CAAAAATACT
*
347611 TAAAGAGTTACACCTATC
1 TAAAGAGTTAAACCTATC
*
347629 TAAAGAGTTAAAGCTATC
1 TAAAGAGTTAAACCTATC
347647 T
1 T
347648 GAATCTAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (18 bp):
TAAAGAGTTAAACCTATC
Found at i:347772 original size:65 final size:65
Alignment explanation
Indices: 347686--347814 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
347676 AATTATTCTA
* * * * *
347686 ACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTT
1 ACAAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTTTT
*
347751 ACAAAAAAACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTTT
1 ACAAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTTT
347815 GCTTAGGAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.32
Consensus pattern (65 bp):
ACAAAAAAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTTTT
Found at i:347858 original size:87 final size:87
Alignment explanation
Indices: 347751--348028 Score: 423
Period size: 87 Copynumber: 3.2 Consensus size: 87
347741 AGTCATTTTT
* * *
347751 ACAAAAAAACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTTTG
1 ACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTG
* * *
347816 CTTAGGAAAGCAAATTATTCTA
66 CTTAGGCATGCCAATTATTCTA
*
347838 ACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTG
1 ACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTG
347903 CTTAGGCATGCCAATTATTCTA
66 CTTAGGCATGCCAATTATTCTA
* * * * *
347925 AC-AAAATAACTTAAACAGTTACAACTATCTTAAAGAGTTAAAGCTATCTGAATCCAACCATATT
1 ACAAAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAATCATTTT
*
347989 GCTTAGGCTTGCCAATTATTCTA
65 GCTTAGGCATGCCAATTATTCTA
348012 ACAAAAATACTTAAAGA
1 ACAAAAATACTTAAAGA
348029 TTTAAAGCTA
Statistics
Matches: 174, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
86 5 0.03
87 164 0.94
88 5 0.03
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (87 bp):
ACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTG
CTTAGGCATGCCAATTATTCTA
Done.