Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000398.1 Hibiscus syriacus cultivar Beakdansim tig00000731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 357049
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 3
Found at i:347875 original size:152 final size:151
Alignment explanation
Indices: 347600--347901 Score: 473
Period size: 152 Copynumber: 2.0 Consensus size: 151
347590 AATTATTCTA
* * * * *
347600 ACAAAAATACTTAAAGAGTTACACCTATCTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGC
1 ACAAAAAAACTTAAAGAGTTACACCTATCTAAAAAGTTAAAGCTATATGAATCCAATCATTTTGC
* * *
347665 TTAGGCATGCCAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAAAGC
66 TTAGGAAAGCAAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAAAGC
*
347730 TATCTGAATCCAGTCATTTTT
131 TATATGAATCCAGTCATTTTT
*
347751 ACAAAAAAACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAATCATTTTG
1 ACAAAAAAACTTAAAGAGTTACACCTATC-TAAAAAGTTAAAGCTATATGAATCCAATCATTTTG
347816 CTTAGGAAAGCAAATTATTCTAACAAAA-ATACTTAAA-GAGTTACACCTATCTTAAAGAGTTAA
65 CTTAGGAAAGCAAATTATTCTAACAAAATA-ACTTAAACG-GTTACACCTATCTTAAAGAGTTAA
347879 AGCTATATGAATCCAGTCATTTT
128 AGCTATATGAATCCAGTCATTTT
347902 GCTTAGGCAT
Statistics
Matches: 138, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
151 29 0.21
152 109 0.79
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.32
Consensus pattern (151 bp):
ACAAAAAAACTTAAAGAGTTACACCTATCTAAAAAGTTAAAGCTATATGAATCCAATCATTTTGC
TTAGGAAAGCAAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAAAGC
TATATGAATCCAGTCATTTTT
Found at i:347884 original size:19 final size:19
Alignment explanation
Indices: 347847--347884 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
347837 AACAAAAATA
*
347847 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
347866 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
347885 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:347958 original size:19 final size:19
Alignment explanation
Indices: 347934--347973 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
347924 AACAAAATAA
347934 CTTAAACAGTTACAA-CTAT
1 CTTAAACAGTTA-AAGCTAT
*
347953 CTTAAAGAGTTAAAGCTAT
1 CTTAAACAGTTAAAGCTAT
347972 CT
1 CT
347974 GAATCCAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (19 bp):
CTTAAACAGTTAAAGCTAT
Found at i:348062 original size:68 final size:68
Alignment explanation
Indices: 347953--348109 Score: 244
Period size: 68 Copynumber: 2.3 Consensus size: 68
347943 TTACAACTAT
*
347953 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATATTGCTTAGGCT-TGCCAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATATTGCTTAGG-TATGCAAATTATTCTAACAAA
348017 AATA
65 AATA
* * *
348021 CTTAAAGATTTAAAGCTATCTGAATCCATCCATTTTGCTTAGGTATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATATTGCTTAGGTATGCAAATTATTCTAACAAAA
348086 ATA
66 ATA
* *
348089 CTTAAAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
348110 TATATAGTGA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
67 1 0.01
68 80 0.99
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (68 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAACCATATTGCTTAGGTATGCAAATTATTCTAACAAAA
ATA
Found at i:348186 original size:87 final size:87
Alignment explanation
Indices: 348021--349877 Score: 2705
Period size: 87 Copynumber: 21.4 Consensus size: 87
348011 AACAAAAATA
* * *
348021 CTTAAAGATTTAAAGCTATCTGAATCCA-TCCATTTTGCTTAGGTATGCAAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGT-CATTTTGCTTAGGCATGCCAATTATTCTAACAAA
348085 AATACTTAAAGAGTTACACCTAT
65 AATACTTAAAGAGTTACACCTAT
* * * * * * *
348108 CTTATATAGTGAAAACTAACTGAATCAAGTCATTTTGCTTAGGCATGCCAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
348173 ATGCTTAAAGAGTTATACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * * *
348195 CTTAATGAGATAAAGCTATATGAATCCAATCATTTTGCTTAGGAATGCTAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
348260 ATACTTATAGAGTTACACCTAC
66 ATACTTAAAGAGTTACACCTAT
* * * *
348282 CTTAAAGAATTAAAACTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
348347 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
348369 CTTAAAGAGTTAAAGTTATCTGAATCCAATCATATTTGCTTAGGCATGCCAATTATACTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCAT-TTTGCTTAGGCATGCCAATTATTCTAACAAA
* * *
348434 AATACTTAAAGAGTTACTCATTT
65 AATACTTAAAGAGTTACACCTAT
* **
348457 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGATTAGGCATATC-ATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
348521 A-ACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * *
348542 CTTTAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAGTTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
348607 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
348629 CTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCTTAGTCATGCCAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
*
348693 AATACTTAAAGAGTTACACCCAT
65 AATACTTAAAGAGTTACACCTAT
* *
348716 CTTAAAGAGATAAAGCTATCTGAATCCAGTCATTTTCCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
348781 ATACTTAAAGAGTTACACCCAT
66 ATACTTAAAGAGTTACACCTAT
*
348803 CTTAAAGAGTTAAA-CTATCTTAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
348867 ATACTTAAAGAGTTACACCGAT
66 ATACTTAAAGAGTTACACCTAT
* * *
348889 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTTTGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
348954 ATAC-TGAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
348975 CTTAAAGAGTTAAAGCTAACTGAATCCA-TCATTTTGCTTAAGCATG-CAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
349038 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
349060 CTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
349125 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * *
349147 CTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATTCCCATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
349212 ATACTTAAAGAGTTAAACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
349234 CTTAAAGAGTTAAAACTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
349299 CA-CCTTAAAGAGTTACACCTAT
66 -ATACTTAAAGAGTTACACCTAT
* * ** * * *
349321 ATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAA
*
349385 AATACTTAAAGAGTTACAACTAT
65 AATACTTAAAGAGTTACACCTAT
* * * *
349408 CTTAAAGAGTTAAAGCTATCCGAATCCAATCATTTTGCTTAGGCATGCAAATTTTTCTAA-AAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
349472 ATACTTATAGAGTTACATCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
349494 CTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* * *
349559 TTACTTAAAGAGTTACACTTGT
66 ATACTTAAAGAGTTACACCTAT
* * * ** *
349581 CTTAAGGAGTTAAAGCTATCTAAATTCAACCATTTTGCTTAGGCATGCCAACTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
349646 AAACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
349668 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
349733 ATACATAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
349755 CTTAAAGAATTAAAGCTATATGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
349819 ATAACTTAAACG-GTTACACCTAT
66 AT-ACTTAAA-GAGTTACACCTAT
349842 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
349878 TAACAAAAAA
Statistics
Matches: 1581, Mismatches: 172, Indels: 34
0.88 0.10 0.02
Matches are distributed among these distances:
84 20 0.01
85 117 0.07
86 259 0.16
87 1099 0.70
88 86 0.05
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (87 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
ATACTTAAAGAGTTACACCTAT
Found at i:348195 original size:155 final size:155
Alignment explanation
Indices: 347866--348196 Score: 452
Period size: 155 Copynumber: 2.1 Consensus size: 155
347856 TTACACCTAT
* *
347866 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
* * *
347931 TAACTTAAACAGTTACAACTATCTTAAAGAGTTAAAGCTATCTGAATCCAACCATATTGCTTAGG
66 TAACTTAAACAGTTACAACTATCTTAAAGAGTGAAAACTAACTGAATCCAACCATATTGCTTAGG
*
347996 CTTGCCAATTATTCTAACAAAAATA
131 CATGCCAATTATTCTAACAAAAATA
* *
348021 CTTAAAGATTTAAAGCTATCTGAATCCA-TCCATTTTGCTTAGGTATGCAAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGT-CATTTTGCTTAGGCATGCAAATTATTCTAACAAA
* * * * * *
348085 A-ATACTTAAAGAGTTACACCTATCTTATATAGTGAAAACTAACTGAAT-CAAGTCATTTTGCTT
65 ATA-ACTTAAACAGTTACAACTATCTTAAAGAGTGAAAACTAACTGAATCCAA-CCATATTGCTT
* *
348148 AGGCATGCCAATTTTTCTAACAAAAATG
128 AGGCATGCCAATTATTCTAACAAAAATA
* *
348176 CTTAAAGAGTTATACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
348197 TAATGAGATA
Statistics
Matches: 154, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
154 5 0.03
155 149 0.97
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (155 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
TAACTTAAACAGTTACAACTATCTTAAAGAGTGAAAACTAACTGAATCCAACCATATTGCTTAGG
CATGCCAATTATTCTAACAAAAATA
Found at i:348647 original size:19 final size:19
Alignment explanation
Indices: 348610--348649 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
348600 AACAAAAATA
*
348610 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
* *
348629 CTTAAAGTGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
348648 CT
1 CT
348650 AATTCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:348824 original size:18 final size:19
Alignment explanation
Indices: 348784--348825 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
348774 AACAAAAATA
*
348784 CTTAAAGAGTTACACCCAT
1 CTTAAAGAGTTACAACCAT
*
348803 CTTAAAGAGTTA-AACTAT
1 CTTAAAGAGTTACAACCAT
348821 CTTAA
1 CTTAA
348826 TCCAGTCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (19 bp):
CTTAAAGAGTTACAACCAT
Found at i:349078 original size:19 final size:19
Alignment explanation
Indices: 349041--349078 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
349031 AACAAAAATA
*
349041 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
349060 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
349079 TTGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:349239 original size:19 final size:19
Alignment explanation
Indices: 349215--349252 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
349205 AACAAAAATA
*
349215 CTTAAAGAGTTAAACCTAT
1 CTTAAAGAGTTAAAACTAT
349234 CTTAAAGAGTTAAAACTAT
1 CTTAAAGAGTTAAAACTAT
349253 ATGAATCCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAAACTAT
Found at i:349512 original size:19 final size:19
Alignment explanation
Indices: 349475--349514 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
349465 TAAAAAAATA
* * *
349475 CTTATAGAGTTACATCTAT
1 CTTAAAGAGTTAAAGCTAT
349494 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAAGCTAT
349513 CT
1 CT
349515 GAATCTAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
CTTAAAGAGTTAAAGCTAT
Found at i:349686 original size:19 final size:19
Alignment explanation
Indices: 349649--349686 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
349639 AACAAAAAAA
*
349649 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
349668 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
349687 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:349894 original size:66 final size:66
Alignment explanation
Indices: 349812--349943 Score: 210
Period size: 66 Copynumber: 2.0 Consensus size: 66
349802 CCAATTATTC
* * * * *
349812 TAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
1 TAACAAAAAAACTTAAACAGTTACACCTATATTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
349877 T
66 T
*
349878 TAACAAAAAAACTTAAATAGTTACACCTATATTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAAAAACTTAAACAGTTACACCTATATTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
349943 T
66 T
349944 GCTTAGGCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (66 bp):
TAACAAAAAAACTTAAACAGTTACACCTATATTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
T
Found at i:349926 original size:19 final size:19
Alignment explanation
Indices: 349890--349928 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
349880 ACAAAAAAAC
* *
349890 TTAAATAGTTACACCTATA
1 TTAAAAAGTTAAACCTATA
*
349909 TTAAAAAGTTAAAGCTATA
1 TTAAAAAGTTAAACCTATA
349928 T
1 T
349929 GAATCCAGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (19 bp):
TTAAAAAGTTAAACCTATA
Found at i:350003 original size:153 final size:153
Alignment explanation
Indices: 349725--350029 Score: 492
Period size: 153 Copynumber: 2.0 Consensus size: 153
349715 CAAATTATTC
* * *
349725 TAACAAAAATACATAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATATGAATCTAGTCATTT
1 TAACAAAAAAACATAAAGAGTTACACCTATATTAAAGAATTAAAGCTATATGAATCCAGTCATTT
*
349790 TGCTTAGGCATGCCAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAA
66 TGCTTAGGCATGCAAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAA
349855 AGCTATCTGAATCCAGTCATTTT
131 AGCTATCTGAATCCAGTCATTTT
* *
349878 TAACAAAAAAACTTAAATAGTTACACCTATATTAAA-AAGTTAAAGCTATATGAATCCAGTCATT
1 TAACAAAAAAACATAAAGAGTTACACCTATATTAAAGAA-TTAAAGCTATATGAATCCAGTCATT
349942 TTGCTTAGGCAAT-CAAATTATTCTAACAAAA-ATACTTAAA-GAGTTACACCTATCTTAAAGAG
65 TTGCTTAGGC-ATGCAAATTATTCTAACAAAATA-ACTTAAACG-GTTACACCTATCTTAAAGAG
350004 TTAAAGCTATCTGAATCCAGTCATTT
127 TTAAAGCTATCTGAATCCAGTCATTT
350030 GCTTAGGCAT
Statistics
Matches: 142, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
152 4 0.03
153 136 0.96
154 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.32
Consensus pattern (153 bp):
TAACAAAAAAACATAAAGAGTTACACCTATATTAAAGAATTAAAGCTATATGAATCCAGTCATTT
TGCTTAGGCATGCAAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAA
AGCTATCTGAATCCAGTCATTTT
Found at i:350013 original size:19 final size:19
Alignment explanation
Indices: 349976--350015 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
349966 AACAAAAATA
*
349976 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
349995 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
350014 CT
1 CT
350016 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:350057 original size:86 final size:87
Alignment explanation
Indices: 349878--350169 Score: 446
Period size: 87 Copynumber: 3.4 Consensus size: 87
349868 CAGTCATTTT
* * * * *
349878 TAACAAAAAAACTTAAATAGTTACACCTATATTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
*
349943 TGCTTAGGCAAT-CAAATTATTC
66 TGCTTAGGC-ATGCCAATTATTC
349965 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCA-TT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
350029 TGCTTAGGCATGCCAATTATTC
66 TGCTTAGGCATGCCAATTATTC
**
350051 TAAC-AAAATAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAACCATT
1 TAACAAAAAT-ACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATT
*
350115 TTGCTTAGGCATGCCTATTATTC
65 TTGCTTAGGCATGCCAATTATTC
* *
350138 TAACAAAAATACTTAAAGAGTTAAAGCTATCT
1 TAACAAAAATACTTAAAGAGTTACACCTATCT
350170 GAATCCAACC
Statistics
Matches: 190, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
85 7 0.04
86 74 0.39
87 104 0.55
88 5 0.03
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (87 bp):
TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTT
TGCTTAGGCATGCCAATTATTC
Found at i:350099 original size:19 final size:19
Alignment explanation
Indices: 350062--350101 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
350052 AACAAAATAA
*
350062 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
350081 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
350100 CT
1 CT
350102 GAATCCAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:350190 original size:68 final size:68
Alignment explanation
Indices: 350081--350237 Score: 269
Period size: 68 Copynumber: 2.3 Consensus size: 68
350071 TTACACCTAT
**
350081 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCCTATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
350146 ATA
66 ATA
350149 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
350214 ATA
66 ATA
* * *
350217 CTTAAAGTGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
350238 TAAAAAGTGA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 84 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.32
Consensus pattern (68 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
ATA
Found at i:350222 original size:155 final size:154
Alignment explanation
Indices: 349995--350324 Score: 511
Period size: 155 Copynumber: 2.1 Consensus size: 154
349985 TTACACCTAT
** *
349995 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTGCTTAGGCATGCCAATTATTCTAACAAAAT
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTGCTTAGGCATGCAAATTATTCTAACAAAAT
* * *
350060 AACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGC
66 AACTTAAAGAGTTACACCTATCTTAAAAAGTGAAAGCTAACTGAATCCAACCATTTTGCTTAGGC
350125 ATGCCT-ATTATTCTAACAAAAATA
131 ATG-CTAATTATTCTAACAAAAATA
350149 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACCA-TTTGCTTAGGCATGCAAATTATTCTAACAAAA
* **
350214 -ATACTTAAAGTGTTACACCTATCTTAAAAAGTGAAAGCTAACTGAATCCAGTCATTTTGCTTAG
65 TA-ACTTAAAGAGTTACACCTATCTTAAAAAGTGAAAGCTAACTGAATCCAACCATTTTGCTTAG
*
350278 GCATGCTAATTTTTCTAACAAAAATA
129 GCATGCTAATTATTCTAACAAAAATA
* *
350304 CTTAAAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
350325 TAATGAGTTA
Statistics
Matches: 161, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
154 33 0.20
155 128 0.80
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.32
Consensus pattern (154 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTGCTTAGGCATGCAAATTATTCTAACAAAAT
AACTTAAAGAGTTACACCTATCTTAAAAAGTGAAAGCTAACTGAATCCAACCATTTTGCTTAGGC
ATGCTAATTATTCTAACAAAAATA
Found at i:350515 original size:19 final size:19
Alignment explanation
Indices: 350478--350517 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
350468 AAAAAAAATA
*
350478 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
* *
350497 CTTAAAGTGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
350516 CT
1 CT
350518 AATTCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:350559 original size:86 final size:87
Alignment explanation
Indices: 350149--352268 Score: 2998
Period size: 87 Copynumber: 24.4 Consensus size: 87
350139 AACAAAAATA
** *
350149 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
350214 ATACTTAAAGTGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * *
350236 CTTAAAAAGTGAAAGCTAACTGAATCCAGTCATTTTGCTTAGGCATGCTAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
350301 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * *
350323 CTTAATGAGTTAAAGCTATATGAA-CACAATGATTTTGCATT-GGCATGGCAATTATTCTAACAA
1 CTTAAAGAGTTAAAGCTATCTGAATC-CAGTCATTTTGC-TTAGGCATGCCAATTATTCTAACAA
*
350386 AAATACTTAAAGAGTTACACCTAC
64 AAATACTTAAAGAGTTACACCTAT
* *
350410 CTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
350475 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
350497 CTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTT-CTTAGGCATGCCAATTATTCTAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
* *
350560 AATATTTAAAGAGTTACACCTAA
65 AATACTTAAAGAGTTACACCTAT
**
350583 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTACCCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
350648 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
350670 CTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTCCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
350735 ATAC-TAAAGAGTTACATCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
350756 CTTAAAGAGTTAAAGCTAACTGAATCCAGCCATTTTGCTTAAGCATG-CAAGTT-TTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAA-TTATTCTAACAAA
350819 AATACTTAAAGAGTTACACCTAT
65 AATACTTAAAGAGTTACACCTAT
* * * *
350842 CTTTAAGAGTTAAAGCTTTTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAATAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
350907 AAACTTAAATAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * **
350929 CTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATTCCCTTTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
350994 ATACTTGAAGTGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
351016 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATACCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
351081 CA-CCTTAAAAAGTTACACCTAT
66 -ATACTTAAAGAGTTACACCTAT
* * * ** * * *
351103 ATTTAAGAGTTAAAGCTATCTGAGTAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAA
*
351167 AATACTTAAAGAGTTACAACTAT
65 AATACTTAAAGAGTTACACCTAT
* * *
351190 CTTAAAGAGTTAATGCTATCTGAATCCAGTCATTTTGCTTAGGCATG-TAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT---AACA
* *
351254 AAAATACTTATAGAGTTACATCTAT
63 AAAATACTTAAAGAGTTACACCTAT
* *
351279 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTCCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
351344 ATAC-TGAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
351365 CTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTTAAGCATG-CAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
351429 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
351451 CTTAAAGAGTTAAAACTATTTGAATCCAGTCA-TTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
351515 ATAC-TAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * * *
351536 CTTTAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAAGCATTCCCATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
351601 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
351623 CTTAAAGAGTTAAAGCTATATGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
351688 CA-CCTTAAAGAGTTACACCTAT
66 -ATACTTAAAGAGTTACACCTAT
* * ** * * *
351710 ATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAA
*
351774 AATACTTAAAGAGTTACAACTAT
65 AATACTTAAAGAGTTACACCTAT
* * *
351797 CTTAAAGAGTTAAAGCTATCTGTATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCT-AACAAA
* *
351862 AATACTTATAGAGTTACATCTAT
65 AATACTTAAAGAGTTACACCTAT
* * * *
351885 CTTAAAGAGTTAAAGCTATTTGAGTCTAGTCATTTTGCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
351950 TTACTTAAAGAGTTACACTTAT
66 ATACTTAAAGAGTTACACCTAT
* **
351972 CTTAAAGAGTTAAAGCTATCTAAATCCAACCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
352037 AAACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
352059 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCAAGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
352124 ATACATAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
352146 CTTAAAGAATTAAAGCTATATGAATCTAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
352210 ATAACTTAAACG-GTTACACCTAT
66 AT-ACTTAAA-GAGTTACACCTAT
*
352233 CTTAAAGAGTTAAAGCTATCTGAATCCAGTAATTTT
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT
352269 AACAAAAAAC
Statistics
Matches: 1809, Mismatches: 195, Indels: 58
0.88 0.09 0.03
Matches are distributed among these distances:
85 96 0.05
86 376 0.21
87 1173 0.65
88 85 0.05
89 70 0.04
90 9 0.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (87 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
ATACTTAAAGAGTTACACCTAT
Found at i:350688 original size:19 final size:19
Alignment explanation
Indices: 350651--350690 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
350641 AACAAAAATA
*
350651 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
350670 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
350689 CT
1 CT
350691 GAATCTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:351297 original size:19 final size:19
Alignment explanation
Indices: 351260--351299 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
351250 AAAAAAAATA
* * *
351260 CTTATAGAGTTACATCTAT
1 CTTAAAGAGTTAAAGCTAT
351279 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAAGCTAT
351298 CT
1 CT
351300 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
CTTAAAGAGTTAAAGCTAT
Found at i:351469 original size:19 final size:19
Alignment explanation
Indices: 351432--351469 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
351422 AACAAAAATA
* *
351432 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAAACTAT
351451 CTTAAAGAGTTAAAACTAT
1 CTTAAAGAGTTAAAACTAT
351470 TTGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAAACTAT
Found at i:351641 original size:19 final size:19
Alignment explanation
Indices: 351604--351641 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
351594 AACAAAAATA
*
351604 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
351623 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
351642 ATGAATCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:351802 original size:19 final size:19
Alignment explanation
Indices: 351778--351817 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
351768 AACAAAAATA
351778 CTTAAAGAGTTACAA-CTAT
1 CTTAAAGAGTTA-AAGCTAT
351797 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAAGCTAT
351816 CT
1 CT
351818 GTATCCAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAAGCTAT
Found at i:352077 original size:19 final size:19
Alignment explanation
Indices: 352040--352077 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
352030 AACAAAAAAA
*
352040 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
352059 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
352078 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:352283 original size:64 final size:65
Alignment explanation
Indices: 352203--352332 Score: 208
Period size: 64 Copynumber: 2.0 Consensus size: 65
352193 CCAATTATTC
* * *
352203 TAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAAAGCTATCTGAATCCAGTAATTT
1 TAACAAAATAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTAATTT
* *
352268 TAACAAAA-AACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAATAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTAATTT
352332 T
1 T
352333 GCTTAGGCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
64 52 0.87
65 8 0.13
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (65 bp):
TAACAAAATAACTTAAACAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTAATTT
Found at i:352376 original size:87 final size:84
Alignment explanation
Indices: 352268--352554 Score: 368
Period size: 87 Copynumber: 3.4 Consensus size: 84
352258 CCAGTAATTT
* *
352268 TAACAAAAA-ACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAAAGTTAAAGCTATCTGAATCCAGTCATTT
352332 TGCTTAGGCAATAAAATTATTC
66 TGCTTAGGC-AT--AATTATTC
*
352354 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAACAGTTAAAGCTATCTGAATCCAGTCAATT
1 TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAAAGTTAAAGCTATCTGAATCCAGTC-ATT
352419 TT-CTTAGGCATGCCAATTATTC
65 TTGCTTAGGCAT---AATTATTC
* * **
352441 TAAC-AAAATAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGGATCCAACCA-T
1 TAACAAAAAT-ACTTAAAGAGTTACACCTATCTTAAAAAGTTAAAGCTATCTGAATCCAGTCATT
**
352504 TTGCTTAGGCAT-GCTATTC
65 TTGCTTAGGCATAATTATTC
* *
352523 TAACAAAAATACTTAAAGAGTTAAAGCTATCT
1 TAACAAAAATACTTAAAGAGTTACACCTATCT
352555 GAATCCAACC
Statistics
Matches: 182, Mismatches: 13, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
82 29 0.16
83 5 0.03
85 3 0.02
86 26 0.14
87 114 0.63
88 5 0.03
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (84 bp):
TAACAAAAATACTTAAAGAGTTACACCTATCTTAAAAAGTTAAAGCTATCTGAATCCAGTCATTT
TGCTTAGGCATAATTATTC
Found at i:352402 original size:19 final size:19
Alignment explanation
Indices: 352365--352404 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
352355 AACAAAAATA
* *
352365 CTTAAAGAGTTACACCTAT
1 CTTAAACAGTTAAACCTAT
*
352384 CTTAAACAGTTAAAGCTAT
1 CTTAAACAGTTAAACCTAT
352403 CT
1 CT
352405 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (19 bp):
CTTAAACAGTTAAACCTAT
Found at i:352408 original size:151 final size:153
Alignment explanation
Indices: 352116--352420 Score: 478
Period size: 151 Copynumber: 2.0 Consensus size: 153
352106 CAAATTATTC
*
352116 TAACAAAAATACATAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATATGAATCTAGTCATTT
1 TAACAAAAATACATAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATATGAATCCAGTCATTT
** *
352181 TGCTTAGGCATGCCAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAAGAGTTAA
66 TGCTTAGGCATGAAAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAACAGTTAA
352246 AGCTATCTGAATCCAGT-AATTT
131 AGCTATCTGAATCCAGTCAATTT
* *
352268 TAACAAAAA-ACTTAAATAGTTACACCTATCTTAAA-AAGTTAAAGCTATATGAATCCAGTCATT
1 TAACAAAAATACATAAAGAGTTACACCTATCTTAAAGAA-TTAAAGCTATATGAATCCAGTCATT
352331 TTGCTTAGGCAAT-AAAATTATTCTAACAAAA-ATACTTAAA-GAGTTACACCTATCTTAAACAG
65 TTGCTTAGGC-ATGAAAATTATTCTAACAAAATA-ACTTAAACG-GTTACACCTATCTTAAACAG
352393 TTAAAGCTATCTGAATCCAGTCAATTT
127 TTAAAGCTATCTGAATCCAGTCAATTT
352420 T
1 T
352421 CTTAGGCATG
Statistics
Matches: 142, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
150 4 0.03
151 121 0.85
152 17 0.12
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (153 bp):
TAACAAAAATACATAAAGAGTTACACCTATCTTAAAGAATTAAAGCTATATGAATCCAGTCATTT
TGCTTAGGCATGAAAATTATTCTAACAAAATAACTTAAACGGTTACACCTATCTTAAACAGTTAA
AGCTATCTGAATCCAGTCAATTT
Found at i:352489 original size:19 final size:19
Alignment explanation
Indices: 352452--352491 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
352442 AACAAAATAA
*
352452 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
352471 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
352490 CT
1 CT
352492 GGATCCAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:352557 original size:150 final size:147
Alignment explanation
Indices: 352384--352703 Score: 423
Period size: 149 Copynumber: 2.1 Consensus size: 147
352374 TTACACCTAT
* * *
352384 CTTAAACAGTTAAAGCTATCTGAATCCAGTCAATTTT-CTTAGGCATGCCAATTATTCTAAC-AA
1 CTTAAAGAGTTAAAGCTATCTGAATCCA-ACAATTTTGCTTAGGCATGCAAATTATTCTAACAAA
* * * *
352447 AATAACTTAAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTGGATCCAACCATTTGCTTAG
65 AAT-ACTTAAAG-GTTACACCTATCTTAAAAAG-TAAAGCTAACTGAAT-C--CCATTTGCTTAA
352512 GCATGCT-A-TTCTAACAAAAATA
124 GCATGCTAATTTCTAACAAAAATA
*
352534 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAACAATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
* *
352599 ATACTTAAAGGTTACACCTATCTTAAAAAGTGAAGCTAACTGAATCTCATTTGCTTAAGCATGCT
66 ATACTTAAAGGTTACACCTATCTTAAAAAGTAAAGCTAACTGAATCCCATTTGCTTAAGCATGCT
352664 AATTTTTCTAACAAAAATA
131 AA--TTTCTAACAAAAATA
* *
352683 CTTAAAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
352704 TAATGAGTTA
Statistics
Matches: 152, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
145 17 0.11
146 1 0.01
147 1 0.01
148 12 0.08
149 58 0.38
150 58 0.38
151 5 0.03
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.32
Consensus pattern (147 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAACAATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
ATACTTAAAGGTTACACCTATCTTAAAAAGTAAAGCTAACTGAATCCCATTTGCTTAAGCATGCT
AATTTCTAACAAAAATA
Found at i:352765 original size:87 final size:87
Alignment explanation
Indices: 352534--357049 Score: 3645
Period size: 87 Copynumber: 54.1 Consensus size: 87
352524 AACAAAAATA
** *
352534 CTTAAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCAAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
352599 ATACTTAAAG-GTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * * *
352620 CTTAAAAAG-TGAAGCTAACTGAAT-C--TCA-TTTGCTTAAGCATGCTAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
352680 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * * * *
352702 CTTAATGAGTTAAAGCTATATGAATACAATGATTTTGCATT-GGCATGCCAATTATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGC-TTAGGCATGCCAATTATTCTAACAAA
*
352766 AATACTTAAAGAGTTACACCTAC
65 AATACTTAAAGAGTTACACCTAT
*
352789 CTTAAAGAGTTAAAGCTATCTGAATCCAATCA-TTTGCTTAGGCATG-CAATTATTCT---AAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
352849 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
352871 CTTAAAGTGTTAAAGCTATCT-AATTCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAA-AAA
1 CTTAAAGAGTTAAAGCTATCTGAA-TCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
*
352934 AATATTTAAAGAGTTACACCTAT
65 AATACTTAAAGAGTTACACCTAT
*
352957 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGCCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
353022 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
353044 CTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTCCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
**
353109 ATAC-TAAAGAGTTACATTTAT
66 ATACTTAAAGAGTTACACCTAT
* * *
353130 CTTAAAGAGTTAAAGCTAACTGAATCCAGTCATTTTGCTTAAGCATG-CAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
353194 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
353216 CTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAATAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
353281 AAACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
353303 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATACCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
353368 CA-CCTTAAAGAGTTACACCTAT
66 -ATACTTAAAGAGTTACACCTAT
* * ** * * *
353390 ATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATG-CATATTTTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCA-ATTATTCTAACAAA
* *
353454 AATACTTAAAGAGTTAGAACTAT
65 AATACTTAAAGAGTTACACCTAT
* * * *
353477 CTTAAAGAGTTAATGCTATCTGAATCCAGTCATTTTGCATAGGCATGCAAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
* *
353542 ATACTTATAGAGTTACATCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
353564 CTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGGCAAGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
353629 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
353651 CTTAAAGAGTTAAATCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
353716 CA-CCTTAAAGAGTTACACCTAT
66 -ATACTTAAAGAGTTACACCTAT
* * ** * * *
353738 ATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATGCTTAATT-TTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGC-CAATTATTCTAACAAA
* *
353802 AATACTTAAAGAGTTAAAGCTAT
65 AATACTTAAAGAGTTACACCTAT
* ** *** * * * *** * *
353825 CTGAATCCAGTCATTTTGC--TCTGGCATGCA--AATTATT-C-TA---A-AAAAAATACTTATA
1 CTTAA-AGAGT--TAAAGCTATCT-GAATCCAGTCATT-TTGCTTAGGCATGCCAATTA-TTCTA
* * ** * * *
353880 GAGTTACATCTATTTAAAGAGTTAAAGCTAT
60 -A--CAAAAATACTTAAAGAGTTACACCTAT
* ** *** ** * * *** * * * *
353911 CTGAATCTAGTCATTTTGCT-TAGGCAAGCCAAG--A--TT-CTAAAAAATACTTAA-GAGT-T-
1 CTTAA-AGAGT--TAAAGCTATCTG-AATCC-AGTCATTTTGCTTAGGCATGC-CAATTATTCTA
*** * *
353967 ACACCTAT-CTTAAAGAGTTAAAGCTAT
60 ACAAAAATACTTAAAGAGTTACACCTAT
** * ** ** * * * **** ***
353994 C-TAATCCAGTCATTTGCT-TAGGCATGCCA---ATATT-C-TA-ACAAAAAAACTTA-AAGAAT
1 CTTAA-AGAGTTA-AAGCTATCTGAAT-CCAGTCATTTTGCTTAGGCATGCCAA-TTATTCTAA-
* * ** * *
354050 TACACCTATCTTAAAGAGTTAAAGCTAT
61 CAAAAATA-CTTAAAGAGTTACACCTAT
* ** * ** * * * * *** * * *
354078 CTGAATCCAG-T-CATTTTTTTAGCAAGCCA---ATTATT-CTAACAAATACTTAA--AGT-T-A
1 CTTAA-AGAGTTAAAGCTATCT-G-AATCCAGTCATT-TTGCTTAGGCATGC-CAATTATTCTAA
*** * * *
354133 CACCTAT-CTTAAAGAATTAAAGCTAT
61 CAAAAATACTTAAAGAGTTACACCTAT
* ** *** ** * * **** ** **
354159 CTGAATCTAGTCATTTTGCT-TAGGCATGCCA---ATTATT-C-TA-ACAAAATAACTTAAACGG
1 CTTAA-AGAGT--TAAAGCTATCTGAAT-CCAGTCATT-TTGCTTAGGCATGCCAA-TTATTCTA
** ** * *
354217 TTAAACCTATCTTAAAGAGTTAAAGCTAT
60 ACAAAAATA-CTTAAAGAGTTACACCTAT
* * * *** * * * * ** *
354246 ATGAATCCAGTCATTTTTAACAAAAAAAACTTAAAT--AGTTACACCTAT-CTTAAAAAGTTAAA
1 CTTAA---AG--A--GTT---AAAGCTATC-TGAATCCAG-T-CA-TTTTGCTT----AG-GCAT
* * * * * *** * * ** *
354308 GCTATATGAATCCAGTC-ATTTTGCTTAGGCAAGCAAATTA-TTCTAA
47 GCCA-ATTATTCTA-ACAAAAATACTTA---AAG--AGTTACACCTAT
** * * * ** *** ** * * *
354354 CAAAAATACTTAAAGAGTTACACCTATCTTAA-AGAGT--TAAAGCTATCTGAAT-CCAGTCATT
1 CTTAAAGAGTT-AA-AG------CTATCTGAATCCAGTCATTTTGCT-TAGGCATGCCAATTATT
** *** * * ** * **
354415 -TTGCTTAGGCATGC-CAATTATTCTAACAAAATAT
57 CTAAC--AAAAATACTTAAAGAGT-T-AC-ACCTAT
* * * * *** ** *
354449 AC-T-AA-AGTTACACCTATCTTAA--GAGT--TAAAGCTATCTGAAT-CCAACCATT-TTGCTT
1 -CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCT-TAGGCATGCC-A--ATTATT-C-T
* *** ** *
354505 AGGCATGCATTTTCTAACA-A---A-A-ATA-
59 A-ACAAAAATACT-TAA-AGAGTTACACCTAT
354530 CTT-AAGAGTTAAA-CTAT-TGAAT-CAG--A-TTTGCTTAGGCATGCC-ATTATT-TAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
354586 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
354608 CTT-AA-AGTTAAAGCTA--TGAATCCAGTCATTTTGCTTAGGCATGCCAATTTTTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
354668 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
354690 CTTAAAGAGTTAAAGCTAATATG-ATCCAAT--TTTTGCTT-GGCATGCCAATTATTCT-A-AAA
1 CTTAAAGAGTTAAAGCT-ATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAA
354749 AATACTTAAAG-GTTACACCTAT
65 AATACTTAAAGAGTTACACCTAT
* *
354771 CTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
354836 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
354858 CTTAAAGTGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCAT-CCAA-T-TTCTAAC--AA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
354918 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
354940 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTA-GCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355004 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
355026 CTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCAAGCCAA-TATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355090 ATAC-T--AGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
355109 CTT-AA-AGTTAAAGCTATCTGAATCCA---ATTTTGCTTA-GCATG-CAATT-TTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355166 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
355188 CTTAAAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTA-T-TAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355250 ATACTTAAAGA-TTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
355271 CTT-AAGAGTT-AAGCTATATG-ATCCA-T-ATTTTGCTTAGGCATGCCCA--ATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355328 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
355350 CTT-AA-AGTTAAAGCTATATGAATCCAGTCA--TT--TT--GCAT-CC-ATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355404 ATAC-T--A-AGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
355422 CTTAAAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
355486 ATA-ATAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
355507 CTTAAAGAGTTAAAGCTA--TGAATCCAGTCA-TTTGCTTAGGCATG-CAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355568 ATACTTAAAGAGTTAC-CCTAT
66 ATACTTAAAGAGTTACACCTAT
*
355589 CTTAAAGA-TTAAA-CTCT-TGAAT--A-TCCATTTTTGCTTAGGCATGCCAATTATTCTAACAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGT-CA-TTTTGCTTAGGCATGCCAATTATTCTAAC-A
355648 AAAATACTT-AAGAGTT--ACCTAT
63 AAAATACTTAAAGAGTTACACCTAT
355670 CTT-AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCC---T-TT-TAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355729 ATAC-TAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
355750 CTTAAAGAGTTAAAGCTAT-AGAATCCAGTCA-TTTGCTTAGGCATG-CAATTATTCTAAC--AA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355810 A-AC-TAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
355830 CTT-AAG-GTTAAAGCTATCTGAAT-C-GTCATTTTGCTTAGGCAT--AAATTTTTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355889 ATACTT-AAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
* *
355910 CTTAAA-AGTTAAAGCTATATGAATCCAGTCA-TTTGCTTAGGCATGCAAATTATTCTAA-AAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
355972 ATACTT--A-AGTTACA-C--T
66 ATACTTAAAGAGTTACACCTAT
355988 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCA-TTTGCTTAGGCATG-CAATTATTCTAAC--AA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356049 ATACTT-AA-AGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
356069 CTTAAAGAGTTAAAGCTATCT-AATCCA--CATTTTGCTTAGGCATGCC-A--ATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356127 A-ACTTAAAGAGTTACACACTAT
66 ATACTTAAAGAGTTACAC-CTAT
** * *
356149 CTTAAAGAGTTAAAGCTAAATGAATCCAATCATTTTGCTTAGGCAAG-CAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356213 ATACTT-AAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
356234 CTTAAAGAGTTAAAGCTA--TGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC--AA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356295 A-ACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
356316 CTT-AAGAGTTAAAGCTATCTGAAT-AAGTCA-TTTGCTTAGGCATG-CAATT-TTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356375 ATAC-TAAAGAGTTACA-CTAT
66 ATACTTAAAGAGTTACACCTAT
356395 C-TAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAAATTATTCT-ACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCC-AATTATTCTAACAAA
356458 AA-AC-T--A-A-TTACA-CTAT
65 AATACTTAAAGAGTTACACCTAT
*
356474 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGC-TAGGCAAGCC-ATT-TTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356535 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
356557 CTTAAAGAGTTAAAGCTA--TGAATCCAG---TTTTGCTTAGG-ATGCCAATTATTCTAAC--AA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356614 A-A-TTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
356634 -TT-AAGAGTTAAAGCTATCTGAAT--AATCATTTTGGCTTAGGCATG-C---TATTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTT-GCTTAGGCATGCCAATTATTCTAACAAA
356691 AATACTTAAAGAGTTACA-CTAT
65 AATACTTAAAGAGTTACACCTAT
356713 CTTAAAGAGTTAAAGCTATCTGAATCCA--CATTTTGCTTAGGCATGCCAATTATTTCTAACAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTA-TTCTAACAAA
356776 AATACTTAAAGAGTTACACCTAT
65 AATACTTAAAGAGTTACACCTAT
*
356799 CTTAAAGAGTTAAAGCTATCTG-ATCCAGTCA-TTTGCTTAGGCAAGCCAATTATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356861 ATACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
356883 CTT-AAGAGTTAAAGCTATCTGAATCTA-TCA-TTTGCTTAGGCATG-CAA--ATTCTAAC-AAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
356941 A-ACTT-AA-AG-TACACCTAT
66 ATACTTAAAGAGTTACACCTAT
*
356959 CTTAAAGAGTTAAAGCTA--TGAATCC---CATTTTGCTTAGGCAAG-CAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
*
357018 AAACTTAAAGAGTTACACCTAT
66 ATACTTAAAGAGTTACACCTAT
357040 C-TAAAGAGTT
1 CTTAAAGAGTT
Statistics
Matches: 3757, Mismatches: 349, Indels: 654
0.79 0.07 0.14
Matches are distributed among these distances:
71 1 0.00
72 19 0.01
73 10 0.00
74 42 0.01
75 25 0.01
76 83 0.02
77 109 0.03
78 169 0.04
79 225 0.06
80 262 0.07
81 426 0.11
82 345 0.09
83 296 0.08
84 223 0.06
85 190 0.05
86 442 0.12
87 758 0.20
88 27 0.01
89 7 0.00
90 10 0.00
91 7 0.00
92 2 0.00
93 7 0.00
94 3 0.00
95 2 0.00
96 7 0.00
97 5 0.00
98 5 0.00
99 4 0.00
100 1 0.00
101 3 0.00
102 2 0.00
103 3 0.00
104 4 0.00
105 15 0.00
106 6 0.00
107 3 0.00
108 5 0.00
109 4 0.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (87 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
ATACTTAAAGAGTTACACCTAT
Found at i:352889 original size:19 final size:19
Alignment explanation
Indices: 352852--352891 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
352842 TCTAAAAATA
*
352852 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
* *
352871 CTTAAAGTGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
352890 CT
1 CT
352892 AATTCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:352975 original size:19 final size:19
Alignment explanation
Indices: 352939--352977 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
352929 AAAAAAATAT
*
352939 TTAAAGAGTTACACCTATC
1 TTAAAGAGTTAAACCTATC
*
352958 TTAAAGAGTTAAAGCTATC
1 TTAAAGAGTTAAACCTATC
352977 T
1 T
352978 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (19 bp):
TTAAAGAGTTAAACCTATC
Found at i:353062 original size:19 final size:19
Alignment explanation
Indices: 353025--353064 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
353015 AACAAAAATA
*
353025 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
353044 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
353063 CT
1 CT
353065 GAATCTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:353234 original size:19 final size:19
Alignment explanation
Indices: 353197--353234 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
353187 AACAAAAATA
*
353197 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
353216 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
353235 TTGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:353321 original size:19 final size:19
Alignment explanation
Indices: 353284--353321 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
353274 AATAAAAAAA
*
353284 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
353303 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
353322 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:353582 original size:19 final size:19
Alignment explanation
Indices: 353545--353584 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
353535 AAAAAAAATA
* * *
353545 CTTATAGAGTTACATCTAT
1 CTTAAAGAGTTAAAGCTAT
353564 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAAGCTAT
353583 CT
1 CT
353585 GAATCTAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
CTTAAAGAGTTAAAGCTAT
Found at i:353669 original size:19 final size:19
Alignment explanation
Indices: 353632--353669 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
353622 AACAAAAATA
*
353632 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
353651 CTTAAAGAGTTAAATCTAT
1 CTTAAAGAGTTAAACCTAT
353670 ATGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:353851 original size:68 final size:68
Alignment explanation
Indices: 353742--353885 Score: 193
Period size: 68 Copynumber: 2.1 Consensus size: 68
353732 ACCTATATTT
* * *
353742 AAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGCATGCTTAATT-TTCTAACAAAAATA
1 AAGAGTTAAAGCTATCTGAATACAGTAAATTTGCTTAGGCATGC-AAATTATTCTAAAAAAAATA
353806 CTTA
65 CTTA
* * *
353810 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTCT-GGCATGCAAATTATTCTAAAAAAAATA
1 AAGAGTTAAAGCTATCTGAATACAGTAAATTTGCT-TAGGCATGCAAATTATTCTAAAAAAAATA
353874 CTTA
65 CTTA
*
353878 TAGAGTTA
1 AAGAGTTA
353886 CATCTATTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
67 4 0.06
68 62 0.93
69 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (68 bp):
AAGAGTTAAAGCTATCTGAATACAGTAAATTTGCTTAGGCATGCAAATTATTCTAAAAAAAATAC
TTA
Found at i:353852 original size:155 final size:154
Alignment explanation
Indices: 353651--354083 Score: 423
Period size: 155 Copynumber: 2.7 Consensus size: 154
353641 TTACACCTAT
* *
353651 CTTAAAGAGTTAAATCTATATGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAA-AAAA
* * *
353716 CA-CCTTAAAGAGTTACACCTATATTTAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAG
65 AATACTTAAAGAGTTACACCTAT-TTAAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAG
353780 GCATGCTTAATTTTCTAACAAAAATA
129 GCATGCTTAATTTTCTAACAAAAATA
*
353806 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTCT-GGCATGCAAATTATTCTAAAAAA
1 CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCT-TAGGCATGCAAATTATTCTAAAAAA
* * ** * *
353870 AATACTTATAGAGTTACATCTATTTAAAGAGTTAAAGCTATCTGAATCTAGTCATTTTGCTTAGG
65 AATACTTAAAGAGTTACACCTATTTAAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGG
* * **
353935 CAAGC-CAAGATTCT-A-AAAAATA
130 CATGCTTAATTTTCTAACAAAAATA
* * *
353957 CTTAAGAGTTACACCTATCTTAAAGAGTTAAAGCTATCTAATCCAGTCA-TTTGCTTAGGCATGC
1 CTTAA-AG--------A-GTT-AA-AGCT--A--TAT-GAATCCAGTCATTTTGCTTAGGCATGC
* *
354021 CAA-TATTCTAACAAAAAA-ACTTAAAGAATTACACCTATCTTAAAGAGTTAAAGCTATCTGAAT
49 AAATTATTCTAA-AAAAAATACTTAAAGAGTTACACCTAT-TTAAAGAGTTAAAGCTATCTGAAT
354084 CCAGTCATTT
Statistics
Matches: 232, Mismatches: 24, Indels: 32
0.81 0.08 0.11
Matches are distributed among these distances:
151 12 0.05
152 3 0.01
153 6 0.03
154 46 0.20
155 72 0.31
156 1 0.00
160 1 0.00
161 2 0.01
162 2 0.01
163 3 0.01
165 1 0.00
166 26 0.11
167 47 0.20
168 10 0.04
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (154 bp):
CTTAAAGAGTTAAAGCTATATGAATCCAGTCATTTTGCTTAGGCATGCAAATTATTCTAAAAAAA
ATACTTAAAGAGTTACACCTATTTAAAGAGTTAAAGCTATCTGAATAGAGTAAATTTGCTTAGGC
ATGCTTAATTTTCTAACAAAAATA
Found at i:354077 original size:19 final size:19
Alignment explanation
Indices: 354040--354079 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
354030 AACAAAAAAA
*
354040 CTTAAAGAATTACACCTAT
1 CTTAAAGAATTAAACCTAT
* *
354059 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAATTAAACCTAT
354078 CT
1 CT
354080 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (19 bp):
CTTAAAGAATTAAACCTAT
Found at i:354292 original size:67 final size:66
Alignment explanation
Indices: 354197--354329 Score: 212
Period size: 67 Copynumber: 2.0 Consensus size: 66
354187 CCAATTATTC
* * *
354197 TAACAAAATAACTTAAACGGTTAAACCTATCTTAAAGAGTTAAAGCTATATGAATCCAGTCATTT
1 TAACAAAAAAACTTAAACAGTTAAACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
354262 T
66 T
* *
354263 TAACAAAAAAAACTTAAATAGTTACACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATT
1 TAAC-AAAAAAACTTAAACAGTTAAACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATT
354328 TT
65 TT
354330 GCTTAGGCAA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
66 4 0.07
67 57 0.93
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (66 bp):
TAACAAAAAAACTTAAACAGTTAAACCTATCTTAAAAAGTTAAAGCTATATGAATCCAGTCATTT
T
Found at i:354399 original size:19 final size:19
Alignment explanation
Indices: 354362--354401 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
354352 AACAAAAATA
*
354362 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
354381 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
354400 CT
1 CT
354402 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:354592 original size:59 final size:64
Alignment explanation
Indices: 354466--354609 Score: 185
Period size: 59 Copynumber: 2.3 Consensus size: 64
354456 TTACACCTAT
354466 CTTAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCATTTTCTAACAAAAATA
1 CTTAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCATTTTCTAACAAAAATA
*
354530 CTTAAGAGTTAAA-CTAT-TGAAT-C-A-GA-TTTGCTTAGGCATGCCATTATT-TAACAAAAAT
1 CTTAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATG-CATT-TTCTAACAAAAAT
354588 A
64 A
* *
354589 CTTAAAGAGTTACACCTATCT
1 CTT-AAGAGTTAAAGCTATCT
354610 TAAAGTTAAA
Statistics
Matches: 73, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
58 14 0.19
59 19 0.26
60 12 0.16
61 5 0.07
62 6 0.08
63 4 0.05
64 13 0.18
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.33
Consensus pattern (64 bp):
CTTAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCATGCATTTTCTAACAAAAATA
Found at i:354649 original size:81 final size:85
Alignment explanation
Indices: 354533--357049 Score: 3115
Period size: 81 Copynumber: 31.1 Consensus size: 85
354523 AAAAATACTT
354533 AAGAGTTAAA-CTATTGAAT-CAG--A-TTTGCTTAGGCATGCCATTATT-TAACAAAAATACTT
1 AAGAGTTAAAGCTATTGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACTT
354592 AAAGAGTTACACCTATCTT-
66 AAAGAGTTACACCTATCTTA
*
354611 AA-AGTTAAAGCTA-TGAATCCAGTCATTTTGCTTAGGCATGCCAATTTTTCTAAC-AAAATACT
1 AAGAGTTAAAGCTATTGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATACT
354673 TAAAGAGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
*
354694 AAGAGTTAAAGCTAATATG-ATCCAAT--TTTTGCTT-GGCATGCCAATTATTCT-A-AAAAATA
1 AAGAGTTAAAGCT-AT-TGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATA
354753 CTTAAAG-GTTACACCTATCTTA
63 CTTAAAGAGTTACACCTATCTTA
* *
354775 AAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAAAAAAATAC
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATAC
354840 TTAAAGAGTTACACCTATCTTA
64 TTAAAGAGTTACACCTATCTTA
* *
354862 AAGTGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCAT-CCAAT-TTCTAAC--AAATACT
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
354923 TAAAGAGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
354944 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTA-GCATGCCAATTATTCTAACAAAAATAC
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATAC
355008 TTAAAGAGTTACACCTATCTTA
64 TTAAAGAGTTACACCTATCTTA
* * *
355030 AAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCAAGCCAATATTCTAACAAAAATAC-
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
355094 T--AGAGTTACACCTATCTT-
65 TAAAGAGTTACACCTATCTTA
*
355112 AA-AGTTAAAGCTATCTGAATCCA---ATTTTGCTTA-GCATGCAATT-TTCTAACAAAAATACT
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
355171 TAAAGAGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
355192 AAGAGTTAAAGCTATTTGAATCCAGTCATTTTGCTTAGGCATGCCAATTA-T-TAAC-AAAATAC
1 AAGAGTTAAAGCTA-TTGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATAC
355254 TTAAAGA-TTACACCTATCTT-
64 TTAAAGAGTTACACCTATCTTA
355274 AAGAGTT-AAGCTATATG-ATCCA-T-ATTTTGCTTAGGCATGCCCA--ATTCTAAC-AAAATAC
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATG-CCATTATTCTAACAAAAATAC
355332 TTAAAGAGTTACACCTATCTT-
64 TTAAAGAGTTACACCTATCTTA
355353 AA-AGTTAAAGCTATATGAATCCAGTCA--TT--TT--GCAT-CCATTATTCTAAC-AAAATAC-
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
355408 T--A-AGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
*
355426 AAGAGTTAAAGCTATCTGAATCCAATCATTTTGCTTAGGCATGCCAATTATTCTAAC-AAAATA-
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATAC
*
355489 ATAAAGAGTTACACCTATCTTA
64 TTAAAGAGTTACACCTATCTTA
* *
355511 AAGAGTTAAAGCTA-TGAATCCAGTCA-TTTGCTTAGGCATGCAATTTTTCTAACAAAAATACTT
1 AAGAGTTAAAGCTATTGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACTT
355574 AAAGAGTTAC-CCTATCTTA
66 AAAGAGTTACACCTATCTTA
*
355593 AAGA-TTAAA-CTCTTGAAT--A-TCCATTTTTGCTTAGGCATGCCAATTATTCTAACAAAAAAT
1 AAGAGTTAAAGCTATTGAATCCAGT-CA-TTTTGCTTAGGCATGCC-ATTATTCTAAC-AAAAAT
355653 ACTT-AAGAGTT--ACCTATCTT-
62 ACTTAAAGAGTTACACCTATCTTA
355673 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCC--T-TT-TAACAAAAATAC-
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
355733 TAAAGAGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
* *
355754 AAGAGTTAAAGCTATAGAATCCAGTCA-TTTGCTTAGGCATGCAATTATTCTAAC--AAA-AC-T
1 AAGAGTTAAAGCTATTGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACTT
355814 AAAGAGTTACACCTATCTT-
66 AAAGAGTTACACCTATCTTA
** *
355833 AAG-GTTAAAGCTATCTGAAT-C-GTCATTTTGCTTAGGCAT-AAATTTTTCTAACAAAAATACT
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
355894 T-AAGAGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
*
355914 AA-AGTTAAAGCTATATGAATCCAGTCA-TTTGCTTAGGCATGCAAATTATTCTAA-AAAAATAC
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGC-CATTATTCTAACAAAAATAC
355976 TT--A-AGTTACA-C--TCTTA
64 TTAAAGAGTTACACCTATCTTA
*
355992 AAGAGTTAAAGCTATCTGAATCCAGTCA-TTTGCTTAGGCATGCAATTATTCTAAC--AAATACT
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
356054 T-AA-AGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
356073 AAGAGTTAAAGCTATCT-AATCCA--CATTTTGCTTAGGCATGCCA--ATTCTAAC-AAAA-ACT
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
356131 TAAAGAGTTACACACTATCTTA
65 TAAAGAGTTACAC-CTATCTTA
* * * *
356153 AAGAGTTAAAGCTAAATGAATCCAATCATTTTGCTTAGGCAAGCAATTATTCTAACAAAAATACT
1 AAGAGTTAAAGCT-ATTGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
356218 T-AAGAGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
356238 AAGAGTTAAAGCTA-TGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAAC--AAA-ACT
1 AAGAGTTAAAGCTATTGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATACT
356299 TAAAGAGTTACACCTATCTT-
65 TAAAGAGTTACACCTATCTTA
* *
356319 AAGAGTTAAAGCTATCTGAAT-AAGTCA-TTTGCTTAGGCATGCAATT-TTCTAAC-AAAATAC-
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
356379 TAAAGAGTTACA-CTATC-TA
65 TAAAGAGTTACACCTATCTTA
356398 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAAATTATTCT-ACAAAAA-A
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCC--ATTATTCTAACAAAAATA
356461 C-T--A-A-TTACA-CTATCTTA
63 CTTAAAGAGTTACACCTATCTTA
*
356478 AAGAGTTAAAGCTATCTGAATCCAGTCATTTTGC-TAGGCAAGCCATT-TTCTAAC-AAAATACT
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
356540 TAAAGAGTTACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
356561 AAGAGTTAAAGCTA-TGAATCCAG---TTTTGCTTAGG-ATGCCAATTATTCTAAC--AAA-A-T
1 AAGAGTTAAAGCTATTGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATACT
356617 TAAAGAGTTACACCTAT-TT-
65 TAAAGAGTTACACCTATCTTA
*
356636 AAGAGTTAAAGCTATCTGAAT--AATCATTTTGGCTTAGGCATG-C--TATTCTAACAAAAATAC
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTT-GCTTAGGCATGCCATTATTCTAACAAAAATAC
356696 TTAAAGAGTTACA-CTATCTTA
64 TTAAAGAGTTACACCTATCTTA
356717 AAGAGTTAAAGCTATCTGAATCCA--CATTTTGCTTAGGCATGCCAATTATTTCTAACAAAAATA
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCC-ATTA-TTCTAACAAAAATA
356780 CTTAAAGAGTTACACCTATCTTA
63 CTTAAAGAGTTACACCTATCTTA
*
356803 AAGAGTTAAAGCTATCTG-ATCCAGTCA-TTTGCTTAGGCAAGCCAATTATTCTAAC-AAAATAC
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCC-ATTATTCTAACAAAAATAC
356865 TTAAAGAGTTACACCTATCTT-
64 TTAAAGAGTTACACCTATCTTA
* *
356886 AAGAGTTAAAGCTATCTGAATCTA-TCA-TTTGCTTAGGCATG-CA-AATTCTAAC-AAAA-ACT
1 AAGAGTTAAAGCTAT-TGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACT
356945 T-AA-AG-TACACCTATCTTA
65 TAAAGAGTTACACCTATCTTA
* * *
356963 AAGAGTTAAAGCTA-TGAATCC---CATTTTGCTTAGGCAAGCAATTATTCTAACAAAAAAACTT
1 AAGAGTTAAAGCTATTGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACTT
357024 AAAGAGTTACACCTATC-TA
66 AAAGAGTTACACCTATCTTA
357043 AAGAGTT
1 AAGAGTT
Statistics
Matches: 2206, Mismatches: 58, Indels: 348
0.84 0.02 0.13
Matches are distributed among these distances:
72 15 0.01
73 5 0.00
74 39 0.02
75 23 0.01
76 76 0.03
77 107 0.05
78 161 0.07
79 222 0.10
80 243 0.11
81 329 0.15
82 245 0.11
83 231 0.10
84 154 0.07
85 117 0.05
86 170 0.08
87 69 0.03
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.33
Consensus pattern (85 bp):
AAGAGTTAAAGCTATTGAATCCAGTCATTTTGCTTAGGCATGCCATTATTCTAACAAAAATACTT
AAAGAGTTACACCTATCTTA
Found at i:354679 original size:142 final size:147
Alignment explanation
Indices: 354381--354691 Score: 430
Period size: 142 Copynumber: 2.1 Consensus size: 147
354371 TTACACCTAT
354381 CTTAAAGAGTTAAAGCTATCTGAATCCAGTCATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
1 CTTAAAGAGTTAAAGCTATCTGAATCCAG-CATTTTGCTTAGGCATGCCAATTATTCTAACAAAA
354446 TATACTAAAGTTACACCTATCTTAAGAGTTAAAGCTATCTGAATCCAACCATTTTGCTTAGGCAT
65 TATACTAAAGTTACACCTATCTTAAGAGTTAAAGCTA-CTGAATCCAACCATTTTGCTTAGGCAT
354511 GCATTTTCTAACAAAAATA
129 GCATTTTCTAACAAAAATA
354530 CTT-AAGAGTTAAA-CTAT-TGAAT-CAG-A-TTTGCTTAGGCATGCC-ATTATT-TAACAAAA-
1 CTTAAAGAGTTAAAGCTATCTGAATCCAGCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAT
**
354586 ATACTTAAAGAGTTACACCTATCTTAA-AGTTAAAGCTA-TGAATCCAGTCATTTTGCTTAGGCA
66 ATAC-T-AA-AGTTACACCTATCTTAAGAGTTAAAGCTACTGAATCCAACCATTTTGCTTAGGCA
354649 TGCCAATTTTTCTAAC-AAAATA
128 TG-C-A-TTTTCTAACAAAAATA
* *
354671 CTTAAAGAGTTACACCTATCT
1 CTTAAAGAGTTAAAGCTATCT
354692 TAAAGAGTTA
Statistics
Matches: 150, Mismatches: 3, Indels: 23
0.85 0.02 0.13
Matches are distributed among these distances:
139 29 0.19
140 10 0.07
141 29 0.19
142 51 0.34
143 5 0.03
144 1 0.01
145 3 0.02
146 5 0.03
147 4 0.03
148 10 0.07
149 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (147 bp):
CTTAAAGAGTTAAAGCTATCTGAATCCAGCATTTTGCTTAGGCATGCCAATTATTCTAACAAAAT
ATACTAAAGTTACACCTATCTTAAGAGTTAAAGCTACTGAATCCAACCATTTTGCTTAGGCATGC
ATTTTCTAACAAAAATA
Found at i:354789 original size:19 final size:18
Alignment explanation
Indices: 354753--354791 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
354743 CTAAAAAATA
*
354753 CTTAAAGGTTACACCTAT
1 CTTAAAGGTTAAACCTAT
*
354771 CTTAAAGAGTTAAAGCTAT
1 CTTAAAG-GTTAAACCTAT
354790 CT
1 CT
354792 GAATCCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGGTTAAACCTAT
Found at i:354876 original size:19 final size:19
Alignment explanation
Indices: 354839--354878 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
354829 AAAAAAAATA
*
354839 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
* *
354858 CTTAAAGTGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
354877 CT
1 CT
354879 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:354958 original size:19 final size:19
Alignment explanation
Indices: 354921--354960 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
354911 CTAACAAATA
*
354921 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
354940 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
354959 CT
1 CT
354961 GAATCCAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:355044 original size:19 final size:19
Alignment explanation
Indices: 355007--355046 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
354997 AACAAAAATA
*
355007 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
355026 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
355045 CT
1 CT
355047 GAATCCAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:355206 original size:19 final size:19
Alignment explanation
Indices: 355169--355206 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
355159 AACAAAAATA
*
355169 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
355188 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
355207 TTGAATCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:356333 original size:18 final size:18
Alignment explanation
Indices: 356301--356335 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
356291 ACAAAACTTA
*
356301 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
356319 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
356336 GAATAAGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Found at i:356414 original size:18 final size:17
Alignment explanation
Indices: 356378--356414 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
356368 TAACAAAATA
*
356378 CTAAAGAGTTACACTAT
1 CTAAAGAGTTAAACTAT
356395 CTAAAGAGTTAAAGCTAT
1 CTAAAGAGTTAAA-CTAT
356413 CT
1 CT
356415 GAATCCAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (17 bp):
CTAAAGAGTTAAACTAT
Found at i:356575 original size:19 final size:19
Alignment explanation
Indices: 356538--356575 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
356528 TAACAAAATA
*
356538 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
356557 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
356576 GAATCCAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:356733 original size:19 final size:18
Alignment explanation
Indices: 356695--356733 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
356685 AACAAAAATA
*
356695 CTTAAAGAGTTACACTAT
1 CTTAAAGAGTTAAACTAT
356713 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAA-CTAT
356732 CT
1 CT
356734 GAATCCACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
CTTAAAGAGTTAAACTAT
Found at i:356817 original size:19 final size:19
Alignment explanation
Indices: 356780--356819 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
356770 AACAAAAATA
*
356780 CTTAAAGAGTTACACCTAT
1 CTTAAAGAGTTAAACCTAT
*
356799 CTTAAAGAGTTAAAGCTAT
1 CTTAAAGAGTTAAACCTAT
356818 CT
1 CT
356820 GATCCAGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (19 bp):
CTTAAAGAGTTAAACCTAT
Found at i:356900 original size:18 final size:18
Alignment explanation
Indices: 356868--356902 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
356858 AAAATACTTA
*
356868 AAGAGTTACACCTATCTT
1 AAGAGTTAAACCTATCTT
*
356886 AAGAGTTAAAGCTATCT
1 AAGAGTTAAACCTATCT
356903 GAATCTATCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGAGTTAAACCTATCTT
Done.