genome.fa.s3980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003980.1 Hibiscus syriacus cultivar Beakdansim tig00008651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144122

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301--365	28	2.3	27	81	5	67	20	7	0	72	1.09
820--871	27	1.9	27	92	0	86	34	1	23	40	1.66
7390--7774	183	2.1	184	91	2	627	42	2	7	46	1.46
13083--13196	60	1.9	60	80	7	133	36	14	15	33	1.88
16079--16136	2	28.5	2	92	3	98	48	3	0	48	1.18
18625--18853	117	2.0	116	81	2	271	55	4	10	29	1.55
35021--35062	21	2.0	21	95	0	75	30	14	7	47	1.71
35057--35155	33	3.0	33	92	1	155	33	7	14	45	1.71
36278--36311	18	1.9	18	88	5	52	41	11	8	38	1.73
36259--36315	15	3.7	15	77	9	51	35	12	10	42	1.77
36404--36435	16	2.0	17	88	11	50	43	21	21	12	1.86
40171--40216	24	2.0	23	87	12	67	45	15	0	39	1.46
41314--41363	2	26.5	2	78	11	52	50	2	0	48	1.12
47607--47638	16	2.0	16	93	0	55	46	0	0	53	1.00
48619--48677	23	2.6	23	86	0	82	30	20	11	37	1.89
48638--48688	23	2.2	23	82	0	57	35	21	7	35	1.83
50143--50195	24	2.2	24	82	0	61	60	0	7	32	1.25
50185--50228	19	2.2	20	84	8	54	65	2	2	29	1.16
52195--52239	7	6.3	7	79	5	54	48	33	0	17	1.48
53580--53784	84	2.4	86	84	4	254	27	20	23	28	1.99
53580--53784	42	4.8	42	76	10	202	27	20	23	28	1.99
56981--57477	261	1.9	259	85	4	696	43	22	8	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57252--58216	221	4.3	226	87	4	1256	41	23	10	24	1.86
57730--58221	239	2.1	239	87	0	705	40	23	10	25	1.87
59448--59494	17	2.5	19	76	20	53	36	2	0	61	1.08
61035--61077	19	2.3	19	100	0	86	27	9	25	37	1.87
62118--62157	20	2.0	20	100	0	80	30	10	20	40	1.85
62711--62739	4	7.2	4	100	0	58	51	24	0	24	1.48
63035--63082	2	24.0	2	86	0	69	47	4	2	45	1.33
65286--65367	41	2.0	41	100	0	164	34	17	17	31	1.93
71874--72062	60	3.2	59	79	7	177	29	22	5	41	1.77
74257--74309	23	2.3	23	90	0	79	32	26	18	22	1.97
74295--74351	21	2.7	21	86	5	80	31	28	17	22	1.97
74437--74470	16	2.1	16	89	10	52	23	17	5	52	1.66
74908--75052	54	2.6	54	85	9	188	28	23	18	29	1.98
75022--75104	20	4.0	20	80	13	89	30	28	13	27	1.94
75023--75104	42	2.0	40	88	9	121	30	29	12	28	1.93
86733--86899	82	2.0	82	100	0	334	27	25	14	32	1.95
89322--89379	28	2.1	28	100	0	116	32	17	17	32	1.93
94354--94404	19	2.7	19	75	16	52	50	1	0	47	1.12
94803--94849	21	2.2	21	84	0	67	19	27	17	36	1.93
94845--94918	20	3.7	20	72	3	76	37	17	20	24	1.93
95505--95553	20	2.5	20	86	0	71	34	24	20	20	1.96
95597--95664	20	3.4	20	87	0	82	16	17	23	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95631--95674	20	2.2	20	87	0	61	13	13	20	52	1.74
97521--97738	20	11.5	20	81	12	255	39	20	19	20	1.92
97524--97776	54	4.6	54	85	7	330	39	20	20	19	1.92
97521--97738	114	1.9	114	91	1	357	39	20	19	20	1.92
97783--97831	20	2.5	20	82	0	62	20	18	24	36	1.94
98384--98425	21	2.2	19	87	12	59	21	35	19	23	1.96
98431--98500	21	3.3	21	72	5	61	24	32	21	21	1.98
98379--98500	42	2.9	41	78	7	120	22	35	19	22	1.96
99843--99878	14	2.6	14	90	0	54	30	0	22	47	1.52
99980--100075	33	2.8	33	90	3	138	42	20	22	13	1.87
100013--100080	19	3.8	19	72	21	74	45	19	22	13	1.84
100084--100137	19	2.8	19	91	0	90	16	20	16	46	1.84
100142--100235	20	4.7	20	86	2	136	20	22	23	34	1.97
102423--102449	14	1.9	14	100	0	54	7	11	29	51	1.64
102649--102702	24	2.2	24	80	6	65	37	20	16	25	1.93
103457--103506	20	2.5	20	100	0	100	32	14	26	28	1.94
103529--103609	20	4.1	20	83	3	67	24	19	18	37	1.94
103539--103665	20	6.3	20	80	3	148	22	18	18	39	1.92
103662--103707	21	2.2	21	88	0	65	36	17	28	17	1.92
110176--110509	166	2.0	167	98	0	652	37	11	10	41	1.74
120200--120229	2	15.0	2	100	0	60	50	0	0	50	1.00
120351--120669	83	3.8	83	85	0	404	30	20	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120750--120788	8	4.9	8	87	0	51	38	25	5	30	1.78
130895--130940	17	2.9	16	72	18	51	71	2	0	26	0.97
132182--132226	17	2.8	17	83	12	51	48	0	6	44	1.29
132270--132322	28	1.9	27	88	3	79	50	1	1	45	1.23

Tables:   1

The End!