genome.fa.s3981.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003981.1 Hibiscus syriacus cultivar Beakdansim tig00008652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94547

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445--521	34	2.2	35	90	2	120	31	0	22	46	1.52
12154--12543	185	2.1	186	92	2	653	43	3	6	45	1.48
12549--12582	9	3.7	9	88	4	50	23	8	14	52	1.69
19567--19606	21	1.9	21	100	0	80	27	0	15	57	1.38
19834--19883	15	3.3	15	69	20	50	42	0	14	44	1.44
19797--19887	30	3.0	30	87	4	121	40	1	13	45	1.50
20472--20527	20	2.8	20	94	0	94	28	37	16	17	1.91
20491--20699	65	3.2	64	80	9	176	30	24	18	26	1.98
20540--20699	65	2.5	66	88	3	227	30	23	18	28	1.97
21875--21988	11	10.2	11	75	3	102	41	14	1	42	1.55
21905--21971	9	7.4	9	71	24	52	38	13	1	46	1.52
21914--22028	14	8.5	14	66	28	54	44	13	0	40	1.50
21872--22037	45	3.6	45	92	4	253	43	13	1	41	1.52
21967--22028	16	3.9	15	76	18	54	48	14	0	37	1.44
22278--22327	11	4.1	12	79	18	50	40	12	0	48	1.40
22280--22396	13	8.7	14	67	21	56	44	10	1	43	1.48
22379--22422	22	2.0	22	90	0	70	47	6	4	40	1.50
25652--25715	17	3.7	17	87	4	83	50	7	3	39	1.47
26528--26632	51	2.1	53	83	13	134	51	10	1	36	1.47
26767--26806	20	2.1	19	90	4	62	0	32	7	60	1.25
27079--27151	30	2.4	30	95	0	128	15	32	32	19	1.92
29626--29684	29	2.0	29	100	0	118	23	13	13	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32153--32211	29	2.0	29	100	0	118	23	13	13	49	1.78
32531--32626	30	3.2	30	82	2	95	35	28	18	17	1.94
32604--32712	31	3.5	31	75	9	114	34	18	18	28	1.94
33443--33604	63	2.6	63	83	4	193	23	24	20	31	1.98
35663--35700	19	2.0	20	94	5	69	28	15	28	26	1.96
35668--35826	63	2.5	63	87	2	212	32	19	21	26	1.97
37133--37169	18	2.1	17	95	5	65	13	16	35	35	1.88
37034--37397	121	3.0	121	97	0	674	24	14	24	35	1.93
37258--37293	18	2.0	18	94	0	63	11	19	33	36	1.87
37108--37295	62	3.1	62	61	26	137	24	14	25	36	1.93
37404--37464	23	2.7	23	86	0	86	21	26	26	26	1.99
37395--37472	23	3.3	23	80	1	75	24	20	21	33	1.97
44666--44710	23	2.0	23	90	0	72	24	26	26	22	2.00
44678--45291	149	4.1	149	97	1	1142	35	21	16	26	1.95
44678--45291	297	2.1	300	96	1	1146	35	21	16	26	1.95
46190--46224	18	1.9	18	88	11	54	22	17	5	54	1.64
46716--46876	64	2.5	63	85	8	200	27	21	17	33	1.96
50769--50841	30	2.5	30	88	2	112	35	8	32	23	1.84
50915--51110	38	5.2	38	68	11	129	48	5	2	44	1.36
50876--51104	113	2.0	114	94	5	399	47	7	3	41	1.48
51028--51110	36	2.2	38	83	12	102	50	1	0	48	1.08
53427--53514	2	50.0	2	72	24	56	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53418--53502	34	2.5	34	92	0	134	56	0	0	43	0.99
53447--53510	27	2.2	30	83	10	89	54	0	0	45	0.99
53421--53514	23	4.1	24	72	14	74	54	0	0	45	0.99
53878--53937	23	2.5	25	75	5	70	41	5	0	53	1.23
57109--57137	14	2.1	14	100	0	58	72	0	0	27	0.85
58102--58142	11	3.7	11	86	0	64	53	0	0	46	1.00
62067--62241	87	2.0	87	90	0	278	40	9	10	40	1.71
62574--62640	26	2.6	26	88	9	93	32	14	4	47	1.65
63996--64030	16	2.1	17	94	5	63	51	2	0	45	1.16
66779--66828	19	2.5	20	87	6	66	48	0	2	50	1.12
66791--66842	20	2.6	20	81	6	52	48	5	1	44	1.38
68900--68979	37	2.1	38	84	9	101	25	5	2	67	1.23
72764--72805	16	2.7	16	82	10	52	42	21	0	35	1.53
72988--73054	22	3.0	22	100	0	134	26	26	26	19	1.99
74631--74692	22	2.8	22	95	2	106	9	33	35	20	1.86
74720--74764	21	2.1	21	87	0	63	15	24	28	31	1.96
76042--76066	7	3.6	7	100	0	50	16	24	0	60	1.36
77817--77858	16	2.7	16	82	10	52	42	21	0	35	1.53
78041--78107	22	3.0	22	100	0	134	26	26	26	19	1.99
79674--79736	23	2.7	23	97	0	117	9	36	33	20	1.85
79764--79807	21	2.1	21	86	0	61	15	25	27	31	1.96
81493--81594	40	2.6	40	84	4	120	28	18	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81499--81600	37	2.7	38	84	4	116	28	19	15	36	1.93
81578--81615	15	2.5	15	100	0	76	18	21	18	42	1.90
81593--81753	65	2.4	68	83	8	204	34	18	12	35	1.88
81718--81789	36	2.0	36	91	0	117	25	20	13	40	1.90
81756--82050	128	2.3	130	90	4	452	29	17	13	39	1.88
81979--82050	38	1.9	37	86	8	101	20	19	15	44	1.86
83529--83608	37	2.1	38	84	9	101	25	5	2	67	1.23
84021--84213	98	2.0	98	91	0	314	33	12	19	34	1.90
84217--84257	2	20.5	2	84	0	55	2	2	51	43	1.28
84208--84268	12	5.1	12	81	0	59	1	8	50	39	1.42
84208--84253	14	3.5	13	82	11	58	2	6	50	41	1.40
84909--85013	2	56.0	2	70	12	71	47	0	0	52	1.00
84909--85014	37	2.9	36	77	4	122	48	0	0	51	1.00
84978--85020	8	5.0	9	91	8	56	48	0	0	51	1.00
85080--85151	35	2.0	35	86	7	101	22	37	9	30	1.86
92794--92861	27	2.6	27	90	4	113	41	17	11	29	1.85

Tables:   1

The End!