genome.fa.s3983.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003983.1 Hibiscus syriacus cultivar Beakdansim tig00008664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192670

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100--1133	17	2.1	17	88	5	52	47	2	2	47	1.32
11072--11102	15	2.1	15	93	0	53	9	12	64	12	1.50
11962--12031	29	2.4	29	95	0	131	30	10	22	37	1.87
16548--16576	14	2.0	15	93	6	51	41	6	34	17	1.76
18849--18901	19	2.8	19	100	0	106	30	16	26	26	1.97
19735--19788	21	2.6	21	93	0	99	20	25	25	27	1.99
23024--23114	19	4.8	19	95	0	164	35	16	21	26	1.95
24495--24657	65	2.5	64	86	3	229	27	15	26	30	1.96
24605--24655	19	2.7	19	85	8	70	25	15	35	23	1.94
32929--33109	64	2.8	63	82	3	209	27	17	25	29	1.97
33057--33107	19	2.7	19	85	8	70	25	15	35	23	1.94
32950--33109	65	2.5	65	85	3	207	27	16	25	30	1.96
32951--33158	65	3.2	63	78	13	183	27	17	24	30	1.97
33679--33714	13	2.5	15	82	17	58	44	5	22	27	1.75
40143--40202	23	2.6	23	75	0	57	26	13	13	46	1.80
42465--42596	59	2.2	59	86	9	180	31	15	18	34	1.93
45832--45859	13	2.2	13	100	0	56	39	14	14	32	1.86
48090--48153	30	2.1	30	85	0	83	34	28	18	18	1.95
48827--48977	64	2.3	65	86	6	200	30	15	19	34	1.93
49896--49956	2	30.5	2	93	0	104	49	3	0	47	1.18
50684--50747	21	3.1	21	75	4	76	17	18	26	37	1.93
50737--50772	16	2.2	16	100	0	72	22	16	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50762--50789	13	2.2	13	100	0	56	14	21	25	39	1.91
50873--50956	6	14.5	6	98	1	147	30	52	16	0	1.44
51443--51479	6	6.5	6	96	3	60	0	16	54	29	1.43
51578--51693	22	5.4	22	85	6	175	37	25	18	18	1.94
51556--51711	41	3.7	41	84	7	206	39	23	18	17	1.92
51685--51753	20	3.4	20	72	4	75	39	23	20	17	1.92
51682--51782	41	2.5	41	95	3	177	37	22	19	19	1.94
51574--51734	63	2.5	63	77	10	159	37	24	19	18	1.94
51682--51786	21	5.1	21	67	9	81	38	23	19	19	1.93
53901--53951	25	2.0	25	81	7	59	11	3	50	33	1.57
54872--54953	32	2.5	33	82	7	87	54	4	4	35	1.43
57337--57361	2	12.5	2	100	0	50	48	0	0	52	1.00
58090--58129	19	2.1	20	86	9	57	62	5	5	27	1.37
60166--60238	26	3.0	24	82	11	71	58	1	1	38	1.15
60189--60238	26	1.9	26	91	0	82	56	0	2	42	1.11
60189--60239	23	2.4	21	84	12	68	54	0	1	43	1.11
60180--60238	19	2.9	19	75	20	57	55	0	1	42	1.09
61018--61048	14	2.2	14	100	0	62	32	22	6	38	1.80
62045--62475	215	2.0	213	98	1	828	31	14	16	37	1.89
63311--63393	25	3.2	25	66	24	71	37	10	40	10	1.75
63325--63413	29	3.2	29	67	23	91	38	10	39	12	1.77
63301--63413	54	2.1	54	100	0	226	38	10	39	10	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63690--63733	18	2.4	19	81	7	56	68	4	9	18	1.34
65398--65435	13	2.7	14	84	12	51	2	21	2	73	1.07
65413--65496	32	2.6	33	81	10	95	7	20	4	67	1.33
66555--66610	20	2.8	20	91	0	94	42	8	17	30	1.80
66820--66862	18	2.4	19	84	7	54	67	4	9	18	1.36
72215--72252	18	2.1	19	85	14	53	13	26	15	44	1.83
76026--76474	229	2.0	227	94	2	785	44	8	7	39	1.62
76540--76585	20	2.3	19	89	10	74	54	10	17	17	1.70
76706--76752	20	2.4	19	79	10	58	55	8	17	19	1.67
79053--79118	33	2.0	33	87	0	96	28	1	45	24	1.62
80907--80950	19	2.4	19	92	3	72	31	2	9	56	1.43
81033--82253	198	6.1	199	97	0	2277	37	14	15	32	1.88
83389--83456	21	3.4	18	69	21	55	36	8	35	19	1.83
83389--83486	6	16.3	6	80	0	70	36	7	34	21	1.81
83404--83490	3	29.0	3	77	0	84	35	5	34	24	1.79
83392--83482	42	2.2	42	91	0	146	35	7	35	21	1.83
83389--83486	18	5.4	18	78	0	88	36	7	34	21	1.81
84955--85626	184	3.7	184	97	0	1263	35	14	15	34	1.89
88184--88247	23	2.8	23	87	0	92	35	6	20	37	1.78
88184--88256	23	3.2	23	82	7	85	34	5	20	39	1.76
88400--88466	30	2.2	30	82	10	75	52	4	0	43	1.21
88609--88672	23	2.8	23	90	0	92	35	6	18	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88877--88913	18	2.1	18	89	0	56	32	5	10	51	1.60
88869--88915	24	2.0	24	86	0	67	34	4	14	46	1.64
92095--92122	13	2.2	13	100	0	56	71	0	0	28	0.86
92087--92132	23	2.0	23	83	8	58	65	0	2	32	1.05
92593--92625	17	1.9	17	100	0	66	48	9	12	30	1.71
92953--93031	27	3.1	27	63	26	73	48	8	10	32	1.68
92953--93043	48	1.9	47	97	2	173	50	8	9	30	1.66
93762--93792	3	10.3	3	92	0	53	64	0	0	35	0.94
96885--96918	16	2.1	16	94	0	59	38	14	14	32	1.87
97635--97669	16	2.1	17	89	5	54	0	40	0	60	0.97
103389--103414	2	13.0	2	100	0	52	50	0	0	50	1.00
103386--103446	10	6.7	9	74	22	56	42	1	0	55	1.09
105269--105343	30	2.4	31	77	6	80	29	29	24	17	1.97
108205--108236	10	3.2	10	95	0	55	46	9	3	40	1.52
111486--111715	21	11.0	21	76	13	224	20	20	24	33	1.97
111492--111712	42	5.3	41	94	2	327	20	19	25	34	1.96
112311--112336	6	4.3	6	100	0	52	0	19	46	34	1.50
112424--112543	19	5.9	19	67	14	69	35	20	20	24	1.96
112432--112503	21	3.4	21	70	14	67	37	20	19	22	1.94
112428--112564	42	3.3	42	89	2	206	34	23	19	22	1.97
112556--112599	20	2.2	20	100	0	88	38	15	20	25	1.92
112602--112647	21	2.2	21	92	0	74	19	21	28	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116066--116109	5	8.8	5	100	0	88	20	20	59	0	1.39
117764--117789	2	13.0	2	100	0	52	0	0	50	50	1.00
119941--120087	41	3.6	41	70	18	126	29	18	23	29	1.98
119904--120090	82	2.3	83	86	4	256	29	17	22	31	1.96
123520--123951	42	10.1	42	77	7	381	25	21	19	33	1.97
123541--123955	85	4.9	85	86	4	491	25	21	19	34	1.96
127021--127052	2	16.0	2	100	0	64	50	0	0	50	1.00
140700--140730	16	1.9	16	93	0	53	41	12	3	41	1.59
140781--140817	18	2.1	18	100	0	74	40	32	10	16	1.83
140799--141040	43	5.6	43	88	1	306	37	24	21	16	1.93
140824--141039	87	2.5	86	89	3	317	37	24	22	16	1.94
144958--145003	18	2.6	18	100	0	92	17	17	43	21	1.88
144959--145025	10	7.0	10	77	13	52	23	17	37	20	1.94
146975--147143	85	2.0	87	84	4	227	37	24	20	16	1.93
146941--147146	43	4.8	43	82	4	238	36	25	20	17	1.94
149866--149912	24	2.0	23	91	4	76	34	29	23	12	1.92
151139--151179	14	3.0	14	85	3	57	21	19	41	17	1.90
151261--151509	43	5.8	43	85	1	286	34	24	20	20	1.96
151293--151510	85	2.5	85	89	1	310	35	25	19	19	1.96
151261--151510	128	1.9	129	83	4	317	34	24	20	20	1.96
161200--161255	3	18.7	3	100	0	112	67	0	0	32	0.91
162961--162992	15	2.1	15	94	0	55	9	28	0	62	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181349--181388	14	2.9	14	85	3	55	2	12	27	57	1.48
181465--181497	16	2.1	16	100	0	66	6	12	24	57	1.57
181680--181704	12	2.1	12	100	0	50	24	8	16	52	1.70
182228--182367	72	1.9	72	84	2	183	27	20	16	35	1.94
187756--187784	14	2.1	14	100	0	58	34	6	0	58	1.25
190067--190232	74	2.3	72	84	6	208	31	1	9	57	1.40

Tables:   1

The End!