Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003985.1 Hibiscus syriacus cultivar Beakdansim tig00008667_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114454

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2269--2310
21
2.0
21
86
9
59
66
4
2
26
1.23
3714--3758
21
2.1
21
83
0
54
31
13
8
46
1.74
5018--5060
21
2.0
21
81
0
50
46
0
9
44
1.35
5470--5520
21
2.4
21
96
0
93
27
27
21
23
1.99
14951--15004
23
2.3
23
100
0
108
48
0
33
18
1.49
31262--31303
15
2.8
15
75
10
50
50
0
0
50
1.00
32096--32140
20
2.2
20
96
0
81
26
26
11
35
1.90
36850--36892
22
2.0
22
95
0
77
23
25
18
32
1.97
47517--47605
30
3.2
30
69
21
102
35
19
15
29
1.93
47545--47628
23
3.3
23
70
20
78
32
17
17
32
1.94
47517--47633
53
2.2
53
100
0
234
34
19
16
29
1.94
52732--52768
19
1.9
19
94
0
65
21
37
16
24
1.93
52716--52875
65
2.5
65
86
7
211
29
26
16
27
1.97
56576--56701
65
1.9
65
82
9
159
36
7
8
46
1.64
57632--57672
17
2.4
17
83
0
55
12
29
29
29
1.93
59943--60025
24
3.5
23
68
6
58
22
15
18
43
1.87
61212--61408
101
2.0
101
100
0
394
40
3
14
42
1.63
61232--61442
101
2.1
101
87
3
300
41
3
13
41
1.61
61646--61743
51
1.9
51
95
0
178
38
4
3
54
1.35
61649--61734
27
3.3
27
71
15
90
40
4
3
51
1.40
61720--61775
25
2.4
24
82
8
71
35
1
3
58
1.26
72736--72820
42
2.0
42
95
0
152
29
29
15
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74191--74364
36
4.9
36
87
4
237
11
47
1
39
1.47
74347--74403
30
1.9
30
85
0
78
17
31
1
49
1.57
75964--76008
22
2.1
21
87
4
63
20
6
2
71
1.20
78422--78485
26
2.5
26
97
0
119
31
32
0
35
1.58
78422--78529
8
13.0
8
75
7
90
36
27
1
34
1.68
79025--79164
60
2.3
60
85
2
183
26
21
17
35
1.95
79058--79176
60
2.0
60
83
3
150
26
21
17
33
1.96
81583--81633
18
2.8
18
90
0
84
62
1
3
31
1.24
81742--81784
15
2.7
16
82
10
61
20
25
13
39
1.90
83666--83693
14
2.0
14
100
0
56
57
7
0
35
1.26
84280--84405
63
2.0
62
92
1
207
53
3
7
34
1.46
93426--94008
297
2.0
293
90
2
918
31
24
17
27
1.97
94314--94545
24
9.7
24
76
10
154
25
37
12
24
1.91
94335--94544
48
4.4
48
79
6
212
24
38
12
24
1.91
94315--94519
72
2.8
71
80
5
232
25
38
12
23
1.90
94336--94521
72
2.6
72
81
6
234
24
39
11
24
1.89
94336--94544
72
2.9
71
77
8
217
24
38
12
24
1.90
96085--96113
14
2.1
14
100
0
58
65
13
6
13
1.45
96731--96805
30
2.5
31
89
8
118
44
2
5
48
1.39

Tables:   1

The End!