genome.fa.s3986.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003986.1 Hibiscus syriacus cultivar Beakdansim tig00008673_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132993

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1170--1195	1	26.0	1	100	0	52	0	100	0	0	0.00
1382--1418	18	2.1	18	94	0	65	27	13	5	54	1.61
1385--1424	18	2.2	18	86	0	53	32	12	7	47	1.69
2049--2147	6	17.2	6	93	3	136	2	16	51	30	1.55
2083--2172	6	15.0	6	94	0	90	10	8	47	33	1.68
2069--2172	18	5.9	18	88	2	113	8	10	49	31	1.68
2289--2446	21	7.6	21	83	8	180	31	26	21	20	1.98
2264--2446	42	4.4	42	82	9	223	32	25	21	21	1.98
2455--2529	21	3.6	21	87	0	105	24	21	25	29	1.99
6171--6208	16	2.2	18	86	9	53	52	10	28	7	1.64
12631--12713	28	3.0	28	91	3	123	33	22	26	16	1.96
13130--13180	26	2.0	26	88	0	75	27	19	25	27	1.99
14046--14154	43	2.5	43	98	0	209	41	14	13	30	1.85
50286--50434	60	2.5	60	82	1	156	36	13	2	48	1.54
51294--51330	2	19.0	2	94	5	67	48	0	0	51	1.00
56668--56708	16	2.6	16	100	0	82	19	14	41	24	1.89
60532--61005	228	2.1	228	86	2	664	28	19	22	29	1.98
61165--61450	135	2.1	135	83	3	362	29	21	21	28	1.98
62819--62858	15	2.7	14	81	11	53	50	0	0	50	1.00
63208--63261	21	2.6	21	93	0	90	27	16	27	27	1.97
63250--63293	20	2.2	20	91	0	70	13	25	25	36	1.92
63257--63301	20	2.2	20	92	0	72	15	22	24	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63947--63973	5	5.4	5	100	0	54	0	40	22	37	1.54
63974--64039	6	11.7	6	98	1	104	0	18	53	28	1.45
64160--64249	41	2.2	41	86	6	128	40	23	18	17	1.92
64137--64230	22	4.4	22	73	8	95	37	24	17	21	1.94
64222--64273	20	2.6	20	100	0	104	42	23	25	9	1.84
64262--64315	21	2.6	21	100	0	108	29	29	16	24	1.97
64910--64961	24	2.2	24	92	0	86	13	13	17	55	1.69
68065--68106	18	2.3	18	87	0	57	30	14	30	23	1.94
79110--79266	63	2.5	62	81	7	176	26	21	16	35	1.94
79412--79597	79	2.3	82	85	5	247	33	16	18	31	1.93
79625--79786	36	4.7	36	72	16	126	40	15	19	24	1.90
79958--80014	3	18.7	3	89	3	78	33	3	1	61	1.23
84745--84834	3	29.7	3	97	2	171	66	0	33	0	0.92
84872--85011	69	2.0	69	98	0	271	40	13	19	27	1.89
85392--85537	47	3.1	47	97	0	274	39	19	8	31	1.83
89811--89882	3	23.7	3	88	2	90	33	5	1	59	1.29
101883--102064	79	2.3	81	86	1	242	33	16	18	31	1.93
102096--102221	36	3.7	36	67	12	102	39	15	20	23	1.91
102429--102509	3	26.7	3	89	2	108	34	4	0	60	1.18
107332--107371	15	2.7	14	81	11	53	50	0	0	50	1.00
107455--107479	2	12.5	2	100	0	50	48	0	0	52	1.00
107702--107767	21	3.2	21	73	4	71	22	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108417--108468	24	2.2	24	89	0	77	15	11	17	55	1.68
112393--112508	3	38.7	3	100	0	232	66	0	33	0	0.92
112546--112685	69	2.0	69	98	0	271	40	13	19	27	1.89
113096--113241	47	3.1	47	96	0	274	39	20	9	30	1.85
117597--117694	3	32.7	3	83	4	117	36	3	1	59	1.20
126903--127059	63	2.5	63	79	7	169	28	22	16	33	1.95
127202--127390	79	2.4	81	85	1	247	34	15	19	30	1.93
127415--127576	36	4.7	36	75	9	156	38	16	20	24	1.92
127483--127612	36	3.6	36	87	2	127	36	16	21	26	1.94
127784--127848	3	21.7	3	87	6	87	33	3	1	61	1.21
131908--132036	59	2.2	59	83	6	163	40	12	11	35	1.79

Tables:   1

The End!