genome.fa.s3987.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003987.1 Hibiscus syriacus cultivar Beakdansim tig00008677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65322

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1982--2021	17	2.5	15	88	8	53	52	2	0	45	1.14
2049--2117	23	3.0	23	95	0	120	46	7	4	42	1.51
2267--2400	68	2.0	68	98	0	259	55	5	4	34	1.45
2622--2646	10	2.5	10	100	0	50	60	8	0	32	1.26
5717--5832	33	3.6	33	93	4	193	56	12	1	29	1.45
5717--5845	33	4.1	31	92	4	181	57	12	1	28	1.44
5860--5912	19	2.8	20	88	5	74	0	33	1	64	1.05
5882--5925	19	2.3	19	84	0	52	4	22	2	70	1.17
7019--7057	17	2.3	17	86	8	53	15	20	30	33	1.94
10544--10762	29	7.6	28	75	13	185	46	17	1	33	1.59
10553--10761	87	2.4	85	82	7	260	46	17	1	33	1.59
10795--10846	18	2.9	18	75	13	63	13	17	50	19	1.78
17913--18113	29	6.9	29	82	4	226	51	13	1	33	1.51
17913--18114	86	2.3	87	88	4	300	50	13	1	33	1.51
18118--18152	7	5.0	7	92	0	61	28	25	28	17	1.97
18144--18179	18	2.0	18	94	0	63	13	22	47	16	1.82
24387--24419	16	2.1	16	94	0	57	39	3	0	57	1.14
24930--24974	16	2.8	16	96	0	81	4	46	0	48	1.22
24929--24978	14	3.4	14	78	10	55	4	44	0	52	1.20
25964--26071	34	3.2	34	71	18	107	45	4	7	42	1.53
25883--26092	69	3.2	66	80	11	211	46	7	4	41	1.53
29946--29978	5	6.6	5	86	13	50	18	0	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31060--31095	18	2.1	18	89	5	56	30	5	0	63	1.17
33139--33222	43	2.0	43	87	0	123	51	23	3	21	1.64
36820--36939	54	2.2	54	95	0	213	32	20	24	23	1.98
37499--37663	45	3.7	45	81	4	172	38	10	21	29	1.87
37644--37701	29	2.0	29	96	0	107	43	13	18	24	1.87
37599--37746	74	2.0	74	88	5	219	39	10	20	29	1.86
37556--37792	119	2.0	119	87	3	343	40	10	18	29	1.85
37673--37829	45	3.5	45	86	1	226	41	10	19	28	1.84
38220--38263	2	22.0	2	90	0	70	45	0	4	50	1.22
38220--38263	14	3.1	14	96	0	79	45	0	4	50	1.22
41698--41727	2	15.0	2	100	0	60	50	0	0	50	1.00
42189--42252	22	2.9	22	90	6	94	25	21	28	25	1.99
42540--42573	15	2.2	16	89	5	52	47	0	11	41	1.40
42974--43026	20	2.9	17	74	15	61	41	1	3	52	1.30
42974--43035	9	6.8	9	80	10	63	40	1	4	53	1.32
42974--43035	18	3.4	18	78	10	72	40	1	4	53	1.32
46928--46994	31	2.2	31	91	0	107	34	14	29	20	1.93
47670--47857	32	5.9	32	85	5	236	29	19	14	36	1.92
47642--47857	96	2.2	96	82	1	254	29	19	15	35	1.93
55764--55817	18	3.3	18	69	28	57	27	1	25	44	1.64
55775--55799	12	2.1	12	100	0	50	16	0	32	52	1.44
55764--55822	30	2.0	30	96	0	109	27	1	27	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59157--59214	20	2.9	20	94	0	98	37	22	22	17	1.93
59380--59416	14	2.6	14	86	0	56	48	21	0	29	1.50
61260--61313	18	2.9	18	83	5	63	38	22	22	16	1.93
61303--61360	14	3.8	14	75	20	62	48	24	17	10	1.78
61287--61365	33	2.4	33	95	2	142	46	22	18	11	1.81
61287--61344	14	3.4	19	71	24	65	46	20	18	13	1.83
61287--61376	33	2.8	33	89	5	121	46	24	17	11	1.81
61388--61451	14	4.4	14	80	16	76	10	15	23	50	1.76
61377--61467	32	2.8	33	93	3	157	12	17	21	48	1.80
61454--61507	20	2.7	20	88	2	72	14	22	24	38	1.91
61986--62027	17	2.4	18	80	4	50	16	16	40	26	1.90
63317--63359	20	2.2	20	86	0	59	48	20	18	11	1.79
63327--63380	20	2.7	20	88	0	72	38	24	18	18	1.93
63601--63644	22	2.0	22	95	0	79	18	15	45	20	1.85
63804--63874	20	3.6	20	92	1	108	26	19	28	25	1.99
63804--63915	20	5.6	20	82	6	102	25	18	25	30	1.98

Tables:   1

The End!