Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003988.1 Hibiscus syriacus cultivar Beakdansim tig00008678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67653

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4930--4993
20
3.2
20
82
6
67
43
17
18
20
1.88
5348--5414
20
3.3
20
87
4
98
20
17
14
46
1.84
5407--5455
20
2.4
21
83
10
66
22
18
28
30
1.97
5407--5575
40
4.2
40
68
15
116
23
17
26
33
1.96
5424--5462
20
2.0
20
100
0
78
17
20
25
35
1.95
5468--5510
20
2.2
20
91
0
68
23
18
20
37
1.94
6343--6415
32
2.3
32
88
2
103
57
10
5
26
1.54
10085--10148
19
3.3
19
76
18
60
23
1
3
71
1.08
11888--11930
20
2.0
22
86
8
63
37
0
23
39
1.55
13790--13849
23
2.6
23
89
0
93
16
25
28
30
1.97
17199--17237
21
1.9
20
84
5
51
35
20
15
28
1.93
21819--21870
21
2.4
22
87
3
70
26
23
26
23
2.00
23846--23904
26
2.2
26
90
3
91
55
1
5
37
1.32
27490--27527
12
3.1
12
85
7
58
34
0
26
39
1.57
33635--33684
18
2.8
18
84
6
57
46
8
8
38
1.63
34527--34564
14
2.4
16
83
16
53
57
0
0
42
0.98
34606--34646
13
3.0
13
86
10
55
82
0
0
17
0.66
35375--35428
18
3.0
18
100
0
108
61
11
0
27
1.30
37034--37095
21
3.0
21
76
4
72
17
19
25
37
1.94
37857--37925
19
3.5
19
73
11
66
42
20
18
18
1.90
37875--37946
22
3.4
22
69
11
69
40
23
18
18
1.91
37857--37946
41
2.2
41
93
0
153
41
22
17
18
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37942--37989
20
2.4
20
92
0
78
47
22
20
8
1.77
37938--38018
20
4.0
21
77
4
76
43
23
18
14
1.87
46626--46663
20
1.9
20
88
0
58
42
5
23
28
1.76
46626--46669
20
2.3
19
80
7
54
43
4
25
27
1.74
48766--48839
22
3.4
22
76
10
71
50
2
1
45
1.24
60389--60433
3
15.0
3
100
0
90
33
0
0
66
0.92
64619--64665
16
3.1
16
88
11
73
12
10
17
59
1.60
64727--64757
16
1.9
16
93
0
53
6
16
22
54
1.64
65005--65073
3
23.7
3
94
5
124
33
0
0
66
0.92
66977--67038
26
2.3
27
89
8
92
53
3
1
41
1.27

Tables:   1

The End!