Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000399.1 Hibiscus syriacus cultivar Beakdansim tig00000732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63564

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3114--3273
65
2.5
65
85
5
200
27
16
22
33
1.95
10207--10248
15
2.6
16
82
17
52
61
0
4
33
1.17
13048--13099
23
2.3
23
86
3
70
17
11
28
42
1.84
13141--13180
3
13.3
3
89
0
62
60
0
2
37
1.11
13121--13181
21
3.0
20
85
7
77
55
0
3
40
1.16
14209--14262
20
2.7
19
75
8
63
16
18
31
33
1.93
24733--24800
30
2.3
30
92
0
109
17
14
7
60
1.57
34684--34811
60
2.1
60
85
5
170
39
4
19
36
1.73
34694--34839
60
2.4
60
83
6
163
44
3
17
34
1.66
35099--35189
23
3.9
23
77
8
94
62
16
10
9
1.53
35122--35194
33
2.2
33
85
7
94
63
16
10
9
1.52
35372--35408
14
2.6
15
87
12
60
62
10
8
18
1.52
35406--35470
24
2.7
24
88
9
89
64
16
10
7
1.47
35441--35468
14
2.0
14
100
0
56
64
21
7
7
1.43
35936--36003
28
2.4
28
80
9
75
61
2
4
30
1.30
36926--36966
21
2.0
21
85
9
57
39
19
0
41
1.52
37767--37868
47
2.2
47
92
0
168
34
16
12
36
1.87
39602--39775
90
1.9
90
98
0
339
50
11
13
24
1.74
40972--41021
15
3.4
15
89
8
68
32
4
22
42
1.72
41219--41269
20
2.6
20
87
3
68
37
7
15
39
1.77
41976--42058
22
3.8
22
95
0
130
22
24
20
32
1.98
43801--43841
21
2.0
21
90
9
66
24
0
24
51
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45504--45564
19
3.2
19
92
0
95
39
4
26
29
1.77
45994--46220
21
11.1
20
69
12
122
35
21
20
22
1.96
45986--46122
19
6.9
19
72
8
112
36
20
21
21
1.95
45986--46188
40
4.9
40
86
5
280
35
21
20
21
1.96
45996--46245
125
2.0
121
85
5
331
36
21
20
22
1.96
45987--46220
40
5.7
39
84
6
164
35
20
20
23
1.96
47429--47469
22
1.9
21
90
5
64
24
0
4
70
1.06
61440--61531
26
3.6
26
97
1
168
46
14
11
27
1.79

Tables:   1

The End!