Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003990.1 Hibiscus syriacus cultivar Beakdansim tig00008682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76814

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2547--2588
16
2.7
16
81
3
59
85
0
4
9
0.72
5724--5884
4
40.8
4
96
2
299
49
24
0
26
1.50
5962--6011
25
2.0
25
96
0
91
24
18
12
46
1.82
8138--8193
3
19.0
3
85
3
60
62
0
0
37
0.95
8133--8184
18
2.9
18
94
5
88
57
0
0
42
0.98
10614--10665
21
2.5
21
100
0
104
21
28
26
23
1.99
24483--24508
2
13.0
2
100
0
52
50
0
0
50
1.00
26772--26816
21
2.2
20
84
11
56
37
2
6
53
1.40
31905--31954
23
2.2
23
96
0
91
42
8
14
36
1.74
33030--33066
3
12.3
3
88
0
56
2
32
32
32
1.72
34550--34797
124
2.0
124
99
0
487
23
14
23
39
1.91
43340--43388
22
2.2
21
80
16
55
34
2
0
63
1.06
45745--45784
18
2.3
18
87
8
57
42
2
5
50
1.37
46884--46978
4
24.5
4
70
19
60
16
6
1
75
1.06
46884--46975
28
3.4
27
81
14
109
16
6
1
76
1.05
46978--47020
2
21.5
2
100
0
86
48
0
0
51
1.00
50954--50979
2
13.0
2
100
0
52
50
0
0
50
1.00
55381--55468
32
2.8
31
81
6
97
34
19
11
35
1.87
55492--55530
16
2.8
13
79
20
51
38
15
5
41
1.69
55498--55529
16
2.0
16
100
0
64
37
12
6
43
1.68
55907--55944
14
2.7
14
87
0
58
23
13
5
57
1.56
56009--56043
17
2.1
17
100
0
70
54
17
0
28
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56376--56407
4
8.0
4
100
0
64
25
0
25
50
1.50
57558--57754
96
2.1
96
83
5
247
43
17
11
27
1.83
59646--59783
64
2.2
63
82
10
156
22
21
20
36
1.95
60397--60443
20
2.3
20
100
0
94
29
19
4
46
1.68
63018--63083
27
2.3
28
82
7
71
51
6
3
39
1.42
63261--63290
2
15.0
2
100
0
60
50
0
0
50
1.00
63937--64021
46
1.9
43
85
7
116
42
7
5
44
1.55
64022--64082
21
2.9
21
72
0
59
49
6
9
34
1.62
64495--64526
14
2.3
14
94
0
55
50
3
0
46
1.17
65622--65668
17
2.6
18
78
18
53
51
12
0
36
1.40
67416--67467
6
9.4
5
87
8
50
80
0
0
19
0.71
67416--67467
11
4.6
11
90
6
70
80
0
0
19
0.71
67416--67467
17
3.1
17
89
8
79
80
0
0
19
0.71
67426--67467
6
7.2
6
94
5
77
83
0
0
16
0.65

Tables:   1

The End!