genome.fa.s3991.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003991.1 Hibiscus syriacus cultivar Beakdansim tig00008692_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  269984

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2318--2353	19	1.9	18	94	5	63	44	2	5	47	1.41
13139--13189	2	25.5	2	95	0	93	50	1	0	47	1.12
18784--19391	262	2.4	257	85	8	810	27	11	19	41	1.86
19749--19854	18	5.9	18	93	1	169	28	25	6	39	1.81
30079--30354	138	2.0	138	95	0	498	24	14	19	42	1.88
40952--41042	47	2.0	46	93	4	157	28	23	4	43	1.72
46758--46782	10	2.5	10	100	0	50	52	16	0	32	1.44
54018--54073	21	2.7	21	80	5	60	30	16	1	51	1.54
54035--54078	21	2.1	21	83	8	54	34	18	0	47	1.49
54290--54742	149	3.0	149	99	0	888	35	21	15	27	1.94
56090--56246	64	2.5	62	81	10	165	28	17	20	33	1.96
59256--59294	18	2.2	18	86	9	53	33	17	0	48	1.48
59508--59962	149	3.0	149	97	0	847	36	21	14	27	1.93
61307--61463	64	2.5	62	79	10	147	29	17	19	33	1.95
64459--64514	21	2.7	21	80	5	60	30	16	1	51	1.54
64476--64519	21	2.1	21	83	8	54	34	18	0	47	1.49
64731--65181	149	3.0	149	98	0	852	35	21	15	27	1.93
66527--66683	64	2.5	62	82	10	174	29	17	19	33	1.95
68069--68158	35	2.5	35	77	8	85	56	8	3	31	1.46
72701--72733	17	1.9	17	100	0	66	54	18	0	27	1.44
72745--72783	15	2.5	15	88	12	53	12	51	0	35	1.40
94689--94760	31	2.3	31	85	0	99	34	12	25	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101067--101118	22	2.3	23	86	6	88	26	23	19	30	1.98
101914--101962	25	2.0	23	81	14	55	32	2	18	46	1.60
111803--111864	21	2.9	21	80	4	70	22	29	27	20	1.99
115711--115819	31	3.5	31	87	0	146	36	15	24	22	1.93
116193--116247	24	2.2	24	96	3	101	34	16	18	30	1.93
116258--116330	3	24.3	3	100	0	146	67	0	0	32	0.91
120666--120732	22	3.0	23	95	4	113	26	26	26	19	1.99
120946--121004	30	2.0	30	93	0	100	33	23	3	38	1.72
121346--121519	67	2.6	67	86	5	217	17	27	27	27	1.97
127557--127624	22	3.0	22	93	2	118	26	26	26	20	1.99
127838--127896	30	2.0	30	93	0	100	33	23	3	38	1.72
128238--128410	67	2.6	67	86	6	217	17	27	27	27	1.98
130850--131213	53	6.9	53	91	3	499	23	28	19	28	1.98
131547--131803	42	6.2	42	71	10	206	30	21	19	28	1.98
131464--131752	122	2.4	122	88	2	438	29	21	18	30	1.97
131923--132023	42	2.4	41	74	6	105	29	23	19	26	1.98
135049--135266	103	2.1	103	86	0	319	27	12	22	37	1.90
135282--135357	23	3.3	23	92	0	125	22	26	25	26	2.00
135273--135373	23	4.3	23	84	1	94	23	20	22	32	1.98
138244--138303	30	2.0	30	96	0	111	30	5	20	45	1.72
138882--138951	34	2.1	32	89	5	104	31	15	31	21	1.95
139811--139858	19	2.5	20	82	3	62	52	6	12	29	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141135--141194	30	2.0	30	96	0	111	30	5	20	45	1.72
141266--141344	21	3.8	21	98	0	149	20	35	18	25	1.95
141276--141336	13	5.5	13	65	34	52	18	37	19	24	1.94
144037--144074	16	2.4	16	100	0	76	18	31	18	31	1.95
145690--145741	21	2.5	21	87	0	77	13	17	25	44	1.85
146902--147224	172	1.9	172	98	1	630	36	14	14	33	1.87
147211--147235	12	2.1	12	100	0	50	36	16	16	32	1.90
155694--155746	22	2.4	21	75	9	52	35	13	3	47	1.61
197796--197919	3	41.0	3	88	1	185	36	0	1	62	1.05
207279--207836	92	6.1	92	96	0	938	27	14	22	35	1.93
209917--210039	64	1.9	64	89	0	192	39	18	20	21	1.92
210402--210456	22	2.5	22	87	0	83	34	10	14	40	1.81
211132--211922	76	10.4	76	98	0	1483	21	19	21	36	1.95
212054--212194	3	47.0	3	89	0	201	36	0	2	60	1.12
227364--227424	30	2.0	30	90	0	95	21	44	1	32	1.62
229216--229248	10	3.2	10	95	4	57	63	9	9	18	1.49
253285--253397	60	1.9	59	85	1	154	28	18	16	36	1.93
253640--253674	15	2.3	15	100	0	70	48	11	0	40	1.39
258552--258637	40	2.3	37	75	14	86	33	4	2	59	1.31
263599--263683	31	2.7	31	85	1	116	30	12	15	41	1.85
265342--265378	17	2.1	18	85	14	51	75	8	0	16	1.02
265396--265448	17	3.5	15	80	12	63	75	0	3	20	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265401--265470	28	2.5	28	83	6	79	72	0	8	18	1.09
265548--265579	14	2.2	15	94	5	57	59	3	9	28	1.44
266799--266861	3	22.7	3	83	15	57	76	0	1	22	0.88
266794--266861	20	3.7	19	81	16	72	77	0	1	20	0.84
266795--266863	8	8.9	7	83	16	59	78	0	1	20	0.83
266814--266866	11	4.6	11	79	9	52	81	0	0	18	0.70
266797--266865	35	2.0	35	88	5	104	78	0	1	20	0.83
266875--266978	37	2.8	36	83	7	109	51	4	0	42	1.29
266875--267005	37	3.5	37	81	9	106	51	4	1	42	1.31
266916--267148	44	5.1	44	77	15	181	46	3	3	46	1.36
266916--267010	39	2.3	41	85	5	122	49	2	1	47	1.20
266989--267020	2	16.0	2	93	0	55	46	0	3	50	1.17
266953--267148	46	4.2	46	84	8	211	45	3	4	46	1.39
267054--267319	36	7.4	35	78	16	253	44	6	3	45	1.45
267120--267183	27	2.5	25	82	9	83	45	7	1	45	1.42
266953--267150	44	4.2	46	83	8	222	44	3	4	46	1.40
267096--267219	63	2.0	62	88	4	187	44	7	2	45	1.44
267147--267319	75	2.4	72	91	2	274	44	6	3	45	1.47
267189--267343	75	2.1	75	83	2	195	49	5	2	41	1.40
268007--268413	84	4.9	84	84	2	507	26	18	25	29	1.98
267981--268417	168	2.6	167	87	3	607	26	18	25	30	1.98

Tables:   1

The End!