genome.fa.s3992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003992.1 Hibiscus syriacus cultivar Beakdansim tig00008693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69950

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059--1104	20	2.3	20	92	0	74	50	10	2	36	1.50
5702--5974	42	6.5	42	81	1	287	24	24	24	27	2.00
14856--14920	32	2.0	32	90	0	103	27	13	18	40	1.89
15551--15630	40	2.0	40	80	4	90	37	17	17	27	1.92
24613--24655	21	2.0	22	81	9	52	48	4	13	32	1.63
31728--31800	23	3.2	23	92	0	110	36	20	6	35	1.80
32218--32290	23	3.2	22	82	7	92	42	17	4	35	1.69
32226--32290	23	2.8	23	88	0	94	41	18	3	36	1.66
31343--33688	489	4.8	488	94	1	4029	40	10	7	40	1.68
32707--32779	23	3.2	23	92	0	119	38	21	5	34	1.77
33194--33266	23	3.2	23	92	0	110	42	19	4	34	1.70
31325--33688	976	2.4	979	94	1	4116	40	10	7	40	1.68
34789--34923	70	1.9	70	82	10	168	26	13	16	43	1.84
39979--40014	2	18.0	2	100	0	72	50	0	0	50	1.00
40276--40317	19	2.2	19	87	8	59	71	0	0	28	0.86
41564--41634	3	24.0	3	84	2	90	64	0	1	33	1.02
41969--42372	177	2.3	176	89	3	607	29	20	18	31	1.96
42988--43047	22	2.7	22	92	5	95	36	13	15	35	1.86
43411--43518	54	2.0	54	90	0	171	27	23	13	35	1.93
45067--45141	18	3.9	18	75	13	69	21	18	30	29	1.97
51939--52011	18	3.9	18	85	7	110	19	21	31	27	1.97
51936--52012	38	2.0	38	94	0	136	20	22	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52150--52196	13	3.4	14	77	11	51	25	8	17	48	1.74
53878--54011	72	1.9	71	87	4	198	34	20	19	26	1.96
56127--56210	42	2.0	42	83	0	105	19	19	11	50	1.78
57558--57599	16	2.7	16	81	3	59	85	0	4	9	0.72
60729--60881	4	39.8	4	85	10	212	49	24	0	26	1.50
60957--61006	25	2.0	25	96	0	91	24	18	12	46	1.82
63099--63174	35	2.2	35	79	6	93	56	0	0	43	0.99
63119--63168	16	3.1	17	77	11	61	56	0	0	44	0.99
63116--63171	19	3.1	19	77	15	73	55	0	0	44	0.99
63100--63162	12	5.7	12	69	27	50	50	0	0	49	1.00
65557--65607	20	2.5	21	93	6	95	21	29	25	23	1.99

Tables:   1

The End!