Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003993.1 Hibiscus syriacus cultivar Beakdansim tig00008695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54564

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2979--3011
17
1.9
17
88
11
50
57
18
9
15
1.63
11432--11462
7
4.6
7
92
8
55
16
32
29
22
1.95
11432--11462
13
2.3
14
94
5
55
16
32
29
22
1.95
13606--13635
5
6.2
5
92
7
53
20
60
20
0
1.37
13606--13636
9
3.3
9
91
8
53
19
58
22
0
1.40
13606--13635
14
2.1
15
93
6
53
20
60
20
0
1.37
25233--25322
45
2.0
45
95
0
162
37
6
20
35
1.79
28430--28538
48
2.3
48
82
6
114
22
12
16
47
1.81
28470--28534
12
5.4
12
74
7
60
18
10
18
52
1.74
28466--28538
24
3.0
24
85
0
110
21
9
17
50
1.74
29916--30006
45
2.0
45
97
0
173
38
7
19
34
1.81
30602--30658
9
6.0
9
76
11
60
15
19
31
33
1.93
30685--30713
12
2.3
13
94
5
51
17
41
27
13
1.87
33152--33262
48
2.3
48
86
6
145
22
13
15
48
1.79
33189--33258
12
5.8
12
73
6
52
18
12
18
50
1.78
33190--33262
24
3.0
24
83
0
101
20
10
17
50
1.76
34797--34860
26
2.5
26
97
0
119
18
12
28
40
1.87
35142--35314
60
2.9
59
80
6
161
32
19
5
42
1.73
35198--35272
29
2.5
30
75
14
82
33
22
5
38
1.77
43350--43528
51
3.5
51
91
0
295
34
15
17
32
1.91
45527--45551
13
1.9
13
100
0
50
72
0
0
28
0.86
46444--46536
7
13.4
7
74
5
55
40
34
3
21
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46769--46813
14
3.2
14
83
0
63
46
28
0
24
1.53
46773--46834
21
3.0
21
83
4
63
46
27
1
24
1.62

Tables:   1

The End!