Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003994.1 Hibiscus syriacus cultivar Beakdansim tig00008699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111005

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
522--571
22
2.3
22
86
3
75
0
26
6
68
1.13
512--575
22
2.6
25
71
16
71
0
23
6
70
1.10
1034--1151
3
38.7
3
93
3
191
62
0
2
34
1.09
1463--2101
112
5.7
113
94
2
1064
28
18
14
38
1.90
2953--3407
82
5.6
83
92
2
753
34
22
13
29
1.92
4527--4588
1
62.0
1
83
0
79
0
8
0
91
0.40
4526--4600
14
5.8
13
86
12
86
0
12
0
88
0.53
8107--8142
17
2.0
19
89
10
58
61
0
13
25
1.33
15148--15184
15
2.7
15
88
12
53
62
8
5
24
1.44
15192--15256
26
2.5
26
72
7
60
69
0
6
24
1.11
15895--15927
16
2.2
16
89
10
52
48
0
0
51
1.00
16841--16908
19
3.4
18
74
20
64
0
22
2
75
0.94
16861--16906
17
2.5
17
86
10
56
0
23
2
73
0.94
16841--16910
21
3.4
21
78
9
81
0
22
2
74
0.95
17374--17468
3
31.7
3
91
0
154
62
0
1
36
1.03
24635--25004
183
2.0
183
91
4
604
44
10
2
42
1.53
29337--29367
16
1.9
16
93
0
53
41
12
16
29
1.85
32306--32338
8
4.1
8
100
0
66
24
0
0
75
0.80
37412--37443
16
2.0
16
100
0
64
18
12
37
31
1.88
37414--37454
16
2.6
16
88
7
57
19
12
31
36
1.89
38924--39398
55
8.8
54
79
6
432
28
26
14
31
1.95
38979--39419
108
4.1
108
85
3
541
27
26
14
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39396--39903
51
9.8
51
86
4
594
22
25
19
32
1.97
39396--39903
153
3.3
153
88
4
682
22
25
19
32
1.97
40303--40474
36
4.8
36
88
0
182
19
20
22
37
1.94
40338--40481
72
2.0
72
89
5
220
19
20
22
36
1.95
48402--48433
16
2.0
16
100
0
64
18
12
37
31
1.88
48404--48444
16
2.6
16
88
7
57
19
12
31
36
1.89
50078--50119
21
2.0
21
86
4
59
35
2
7
54
1.41
50727--50788
2
31.5
2
96
3
117
50
0
0
50
1.00
51674--51699
3
8.7
3
100
0
52
30
0
0
69
0.89
54383--54422
21
1.9
21
84
0
53
35
10
17
37
1.83
54852--54892
20
2.0
22
90
9
68
41
0
0
58
0.98
55461--55535
2
37.5
2
94
0
132
50
2
0
46
1.15
55553--55648
20
4.8
20
72
11
70
73
0
15
10
1.08
55553--55648
40
2.4
40
81
8
97
73
0
15
10
1.08
55760--55800
14
3.1
14
80
20
52
75
4
4
14
1.14
56935--57339
39
10.6
39
76
11
304
47
6
3
42
1.47
56935--57334
37
10.5
37
77
10
319
47
6
3
42
1.47
56968--57288
116
2.8
119
78
12
321
47
5
3
42
1.44
58690--58733
19
2.3
19
96
0
79
34
13
27
25
1.93
70887--70930
18
2.3
18
85
14
54
50
0
2
47
1.13
75528--75586
29
2.0
29
83
6
75
30
15
6
47
1.71
75540--75616
29
2.7
29
83
0
91
29
20
9
40
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76027--76079
19
2.8
19
77
5
54
39
1
0
58
1.09
93865--93893
2
14.5
2
100
0
58
48
0
0
51
1.00
99795--99847
27
2.0
27
84
0
70
20
5
16
56
1.60
99857--99900
20
2.1
21
88
12
65
61
0
0
38
0.96
101396--101447
26
2.0
26
100
0
104
34
19
7
38
1.80
109856--109901
2
23.0
2
100
0
92
50
0
0
50
1.00
110110--110209
17
6.2
17
70
19
79
29
28
16
27
1.97
110085--110188
11
9.6
11
68
14
56
27
23
19
29
1.98

Tables:   1

The End!