genome.fa.s3997.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003997.1 Hibiscus syriacus cultivar Beakdansim tig00008711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64253

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7735--7778	23	1.9	23	95	0	79	34	6	15	43	1.74
8733--8831	32	3.1	32	88	0	135	25	26	31	17	1.97
9514--9599	24	3.8	24	76	14	85	29	27	20	22	1.99
12148--12194	19	2.5	19	90	10	71	29	19	23	27	1.98
13042--13082	18	2.3	18	95	0	73	21	19	34	24	1.97
13475--13514	21	1.9	21	85	10	55	57	2	15	25	1.50
13939--13963	4	6.2	4	100	0	50	24	0	24	52	1.48
15153--15215	27	2.3	28	83	8	76	19	11	23	46	1.82
24267--24299	16	2.0	17	88	5	50	54	6	3	36	1.41
24286--24506	87	2.5	87	87	0	298	45	9	11	33	1.73
24660--24728	24	2.9	25	79	18	76	43	1	2	52	1.25
24992--25024	11	2.9	12	91	8	52	66	15	0	18	1.25
25067--25117	21	2.5	21	87	3	77	64	13	9	11	1.49
25092--25256	86	1.9	86	96	0	303	43	14	14	27	1.85
25273--25315	20	2.2	20	95	0	77	62	11	11	13	1.54
25178--25595	112	3.7	113	89	2	576	45	13	12	28	1.80
25175--25512	112	3.0	113	94	1	583	47	14	12	25	1.79
28626--28973	183	1.9	184	96	1	646	32	16	14	36	1.89
31873--32658	200	3.9	200	93	0	1340	31	16	14	36	1.89
32888--32936	19	2.6	19	96	0	89	55	10	2	32	1.45
34493--34559	30	2.3	30	92	2	109	4	43	0	52	1.21
34566--34606	18	2.4	16	81	14	55	14	17	2	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34761--34826	33	2.0	33	90	0	105	24	45	0	30	1.53
34876--34924	21	2.3	21	89	0	71	16	32	10	40	1.82
37177--37223	20	2.4	19	82	10	67	19	17	10	53	1.72
37358--37404	20	2.4	19	79	10	58	19	19	10	51	1.75
37144--37616	181	2.6	182	90	1	734	26	17	14	42	1.87
43458--43578	35	3.3	36	87	6	165	43	19	4	31	1.72
48006--48125	35	3.3	36	85	6	154	45	18	4	32	1.69
48054--48117	20	3.4	20	66	29	59	46	18	3	31	1.65
50659--50734	27	2.7	27	80	15	93	56	3	0	39	1.18
58481--58610	68	1.9	68	84	6	174	34	11	18	35	1.87

Tables:   1

The End!