Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003998.1 Hibiscus syriacus cultivar Beakdansim tig00008713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47095

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--777
104
7.5
105
91
4
1239
22
18
26
33
1.97
1--777
204
3.8
208
92
4
1226
22
18
26
33
1.97
1523--1631
56
1.9
56
85
3
148
12
21
11
54
1.70
11886--11942
19
2.9
19
73
2
60
70
3
3
22
1.18
12026--12052
14
1.9
14
100
0
54
59
0
11
29
1.32
12138--12178
21
2.0
21
85
9
57
60
2
7
29
1.36
17667--17755
31
2.9
31
83
6
126
35
14
13
35
1.86
29206--29272
34
2.0
34
96
0
125
35
16
13
34
1.88
29608--29648
20
2.0
20
90
0
64
51
4
9
34
1.56
33699--33735
13
2.8
13
91
0
65
16
45
27
10
1.80
33695--33738
13
2.8
17
70
29
51
18
50
22
9
1.75
36293--36456
57
2.9
57
87
0
229
19
20
28
31
1.97
39915--39972
22
2.7
21
75
21
66
72
0
12
15
1.12
39999--40032
16
2.2
16
89
5
52
85
2
0
11
0.71
40088--40126
21
1.9
21
84
5
53
82
5
2
10
0.93
40371--40431
26
2.3
26
97
0
113
27
27
24
19
1.99
40900--40942
3
14.3
3
90
9
70
67
0
2
30
1.03
40970--41256
37
8.2
37
78
16
242
43
6
4
44
1.50
44315--44360
23
2.0
23
100
0
92
39
13
4
43
1.63
46525--46582
29
2.0
29
100
0
116
48
13
13
24
1.79

Tables:   1

The End!