genome.fa.s3999.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003999.1 Hibiscus syriacus cultivar Beakdansim tig00008715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87707

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974--1225	96	2.7	96	85	4	318	31	17	18	32	1.94
2509--2576	21	3.5	21	67	22	67	23	19	13	44	1.85
2481--2665	36	5.1	36	93	0	316	26	20	13	40	1.89
2512--2648	21	7.4	21	60	28	60	25	20	11	42	1.86
2823--2911	33	2.8	32	91	3	142	38	19	8	33	1.83
2903--3184	80	3.5	79	76	9	248	31	24	18	25	1.97
3173--3242	28	2.5	28	90	2	104	42	21	20	15	1.88
8991--9211	74	3.1	71	80	9	250	56	11	0	31	1.41
9061--9169	19	5.8	19	68	10	55	55	13	0	29	1.44
22875--22927	20	2.7	20	74	11	63	28	32	15	24	1.95
22980--23063	20	4.2	20	78	0	96	46	25	10	17	1.80
23594--23638	20	2.2	20	96	0	81	11	17	22	48	1.78
23606--23649	20	2.2	20	83	0	52	13	15	20	50	1.78
25384--25433	4	12.5	4	82	0	64	26	2	4	68	1.18
25570--25625	21	2.7	20	75	10	58	25	35	14	25	1.93
25577--25675	42	2.4	42	77	6	110	24	33	19	23	1.97
25578--25675	21	4.7	21	74	5	81	24	33	19	22	1.97
27023--27191	66	2.5	67	88	8	231	28	2	16	52	1.57
27051--27191	66	2.2	65	93	2	239	30	1	17	51	1.54
27249--27306	20	2.9	20	92	0	98	41	17	22	18	1.90
27938--27968	16	1.9	16	93	0	53	67	0	3	29	1.06
29048--29097	25	2.0	25	92	0	82	46	22	6	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29168--29284	20	6.2	20	74	13	95	41	21	17	19	1.91
31907--31953	24	2.0	24	95	0	85	34	17	21	27	1.95
31911--31962	24	2.2	24	85	0	68	36	19	19	25	1.95
32074--32107	12	2.8	12	90	0	50	14	0	29	55	1.40
32702--32739	16	2.5	15	84	12	51	65	0	5	28	1.14
32899--32948	19	2.5	20	83	6	57	32	14	20	34	1.92
32939--33065	20	6.3	20	84	0	173	18	14	25	42	1.87
32918--33053	40	3.4	40	85	3	166	19	14	24	41	1.89
32939--33065	60	2.1	60	97	0	236	18	14	25	42	1.87
32939--33088	40	3.8	39	84	6	160	19	14	22	44	1.86
32939--33088	60	2.5	60	89	3	178	19	14	22	44	1.86
33093--33146	20	2.7	20	82	5	74	25	9	31	33	1.88
33958--34545	4	147.2	4	92	1	847	25	4	24	45	1.72
34543--34747	4	51.2	4	89	0	203	0	11	49	39	1.38
34543--34747	6	34.2	6	93	0	203	0	11	49	39	1.38
34745--34896	4	39.5	4	82	7	163	23	2	25	48	1.64
44149--44199	2	25.5	2	100	0	102	49	0	0	50	1.00
45909--46964	525	2.0	525	96	0	1941	30	20	19	30	1.97
47830--47865	18	2.1	17	89	5	54	33	33	13	19	1.91
49035--49112	23	3.3	23	78	1	84	32	23	19	25	1.98
49119--49332	103	2.1	103	94	0	374	35	24	14	26	1.93
50122--50278	64	2.5	64	76	9	158	25	19	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54964--55181	103	2.1	103	96	0	400	36	23	13	26	1.92
55920--56076	64	2.5	64	78	9	176	26	20	21	32	1.97
60665--60712	6	8.0	6	92	0	69	52	20	0	27	1.47
60717--60749	12	2.8	12	90	0	57	24	15	0	60	1.35
61078--61119	18	2.3	18	88	8	59	30	30	19	19	1.96
65724--65752	6	4.8	6	100	0	58	48	0	17	34	1.47
65814--65853	21	1.9	21	94	0	71	27	22	22	27	1.99
67331--67367	19	1.9	19	94	0	65	51	24	0	24	1.49
69661--69711	20	2.5	20	90	0	84	37	15	19	27	1.92
69763--69805	20	2.2	20	84	12	54	34	11	23	30	1.90
70538--70619	15	5.3	15	74	18	78	73	0	2	24	0.96
70659--70701	18	2.4	18	92	0	68	72	0	2	25	0.97
81339--81392	22	2.5	21	78	3	63	31	9	22	37	1.86
81501--81544	20	2.3	19	80	4	52	31	34	0	34	1.58
84400--84498	31	3.4	29	84	6	119	38	10	13	38	1.78
84619--84652	18	2.0	18	88	11	54	55	0	5	38	1.24
85632--85678	20	2.4	18	80	19	51	57	2	2	38	1.23

Tables:   1

The End!