Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000004.1 Hibiscus syriacus cultivar Beakdansim tig00000010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95223

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5038--5065
2
14.0
2
100
0
56
50
0
0
50
1.00
6642--6699
18
3.4
17
71
21
50
62
1
1
34
1.16
6638--6698
14
4.2
15
69
26
51
60
1
1
36
1.16
7275--7340
31
2.1
31
85
0
87
33
15
24
27
1.95
7325--7397
31
2.4
31
85
0
92
30
21
16
31
1.95
13998--14076
37
2.1
37
100
0
158
13
34
24
27
1.93
16877--16915
6
6.5
6
100
0
78
15
66
0
17
1.25
25910--25966
20
2.9
19
89
2
87
49
14
10
26
1.75
25910--25962
10
5.3
10
73
8
54
50
13
11
24
1.73
36076--36104
15
1.9
15
100
0
58
6
10
68
13
1.37
36299--36327
8
3.6
8
100
0
58
10
0
0
89
0.48
38970--39026
19
2.9
19
76
5
60
56
5
0
38
1.22
42956--43299
43
8.0
43
80
6
351
25
15
24
34
1.95
50586--50620
16
2.2
16
89
0
52
57
20
8
14
1.63
52030--52109
38
2.1
39
88
2
117
41
16
18
23
1.90
51996--52134
41
3.5
40
78
13
128
41
17
16
24
1.89
52104--52408
137
2.3
133
81
6
346
35
16
16
31
1.91
52479--52598
41
2.9
41
88
0
177
31
18
15
35
1.91
52486--52641
82
1.9
82
80
6
181
28
19
17
34
1.94
55111--55162
22
2.4
22
100
0
104
55
17
17
9
1.67
55544--55596
19
2.8
19
97
0
97
37
20
5
35
1.77
56523--56560
2
19.0
2
100
0
76
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59099--59254
21
7.4
22
71
16
109
47
1
3
47
1.28
59110--59228
42
2.9
41
79
10
134
48
1
4
45
1.31
59107--59254
41
3.5
41
81
9
174
48
1
4
45
1.29
60000--60045
22
2.1
22
100
0
92
36
26
10
26
1.89
61710--61747
6
6.3
6
87
0
58
31
0
10
57
1.32
61710--61747
12
3.2
12
96
0
67
31
0
10
57
1.32
61691--61743
18
2.8
19
85
5
63
32
5
7
54
1.52
62655--62688
15
2.2
16
89
5
52
61
14
2
20
1.46
67922--67964
20
2.2
20
86
0
59
62
4
2
30
1.28
71055--71117
33
1.9
33
84
12
85
25
0
11
63
1.27
71098--71219
64
1.9
63
88
5
183
31
0
13
54
1.44
71870--71920
18
2.8
18
85
5
59
27
1
0
70
0.98
71889--71926
5
7.6
5
82
11
51
23
0
0
76
0.79
71883--71926
15
2.9
15
86
6
54
25
0
0
75
0.81
73721--73792
18
4.0
18
98
0
135
29
16
26
27
1.97
76948--76984
16
2.3
16
95
0
65
43
10
18
27
1.83
77296--77360
11
6.3
11
73
10
57
20
9
1
69
1.24
79702--79750
19
2.6
18
81
9
62
20
4
2
73
1.10
82605--82664
28
2.1
28
84
6
77
26
11
15
46
1.79
87293--87349
29
2.0
29
100
0
114
24
15
14
45
1.83

Tables:   1

The End!