genome.fa.s40.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000040.1 Hibiscus syriacus cultivar Beakdansim tig00000061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89006

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5390--5429	21	1.9	21	89	0	62	25	40	25	10	1.86
7977--8184	76	2.8	77	88	2	289	24	31	23	20	1.98
9675--9699	3	8.3	3	100	0	50	68	0	0	32	0.90
10471--10517	23	2.0	23	83	0	58	51	0	2	46	1.13
12114--12208	3	31.7	3	78	17	92	64	1	1	33	1.08
12553--13129	122	4.7	122	96	0	1039	26	18	13	41	1.88
12546--13357	122	6.9	112	89	4	523	27	18	13	39	1.89
14477--14554	18	4.1	18	80	11	77	56	3	8	30	1.48
14881--14908	14	2.0	14	100	0	56	14	7	0	78	0.95
14912--14950	17	2.4	17	91	4	62	0	17	0	82	0.68
14912--14948	16	2.3	17	90	9	60	0	16	0	83	0.64
18441--18482	9	4.6	9	84	3	57	57	0	19	23	1.41
18441--18482	18	2.3	19	91	4	68	57	0	19	23	1.41
23870--23899	15	2.1	15	93	6	53	33	26	6	33	1.83
25099--25125	4	6.8	4	100	0	54	77	0	0	22	0.76
26155--26201	23	2.0	23	83	0	58	51	0	2	46	1.13
27652--27748	3	32.7	3	84	12	121	64	1	1	32	1.07
30367--30446	36	2.2	36	86	4	117	16	3	5	75	1.13
33965--34850	106	8.4	106	95	0	1513	33	24	18	23	1.97
35042--35292	84	3.0	84	80	5	276	30	25	19	23	1.98
35026--35286	81	3.2	82	80	5	287	29	25	20	24	1.99
35309--35577	36	7.5	36	94	0	457	25	23	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35561--35652	36	2.8	32	80	13	105	40	19	8	31	1.82
35575--35648	36	2.1	36	89	5	114	45	16	8	29	1.76
37380--37459	36	2.2	36	86	4	117	16	3	5	75	1.13
37543--37569	6	4.5	6	100	0	54	44	0	0	55	0.99
54231--54280	16	3.4	16	73	21	63	62	0	6	32	1.20
55021--55054	12	2.8	12	81	0	50	47	0	0	52	1.00
55318--55374	18	3.2	18	66	14	55	40	24	0	35	1.56
55318--55399	35	2.3	37	89	4	123	42	21	0	35	1.53
55345--55415	37	1.9	37	85	0	97	43	26	1	28	1.63
55900--56180	143	1.9	144	87	4	413	45	9	7	37	1.64
56335--56430	35	2.7	35	88	0	120	30	2	27	40	1.68
58473--58503	13	2.4	13	100	0	62	25	16	9	48	1.76
59295--59338	22	2.0	23	81	4	54	13	15	31	38	1.87
60943--60992	16	3.2	16	80	11	59	48	8	4	40	1.51
63881--64374	90	5.5	90	92	1	812	34	22	18	23	1.96
63900--64374	181	2.6	180	93	1	808	35	22	18	23	1.96
63881--64374	271	1.8	271	92	1	830	34	22	18	23	1.96
64409--64506	43	2.3	43	92	0	160	29	31	12	26	1.92
64568--64670	36	3.0	35	80	7	131	38	14	23	23	1.91
64570--64671	32	3.1	32	81	5	123	39	14	22	23	1.91
64975--65119	34	4.3	34	91	1	220	34	13	18	33	1.89
65238--65469	32	7.2	32	88	1	320	33	23	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65256--65469	65	3.3	64	87	1	329	32	23	14	29	1.94
65237--65469	97	2.4	97	90	0	367	33	23	13	29	1.93
65832--65916	32	2.7	32	94	0	143	15	7	28	49	1.70
66558--66596	14	2.7	14	88	4	60	0	15	5	79	0.90
66815--66860	2	23.0	2	95	0	83	50	2	0	47	1.13
78628--78662	11	3.1	11	88	8	52	37	8	2	51	1.47
78627--78661	12	3.0	12	87	8	54	40	8	2	48	1.49
78919--79112	102	1.9	102	97	0	370	47	6	1	44	1.37
79238--79285	16	3.0	16	78	0	60	33	12	31	22	1.91
79240--79291	16	3.3	15	78	7	59	30	11	32	25	1.91
83381--83406	11	2.4	11	100	0	52	53	19	7	19	1.68
86165--86322	78	2.0	78	83	2	201	37	11	17	33	1.85
87514--87579	18	3.6	18	74	24	66	53	28	12	6	1.62
87677--87703	5	5.4	5	100	0	54	44	37	18	0	1.50

Tables:   1

The End!