genome.fa.s400.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000400.1 Hibiscus syriacus cultivar Beakdansim tig00000736_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71705

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592--630	21	2.0	21	85	14	57	43	0	20	35	1.52
1034--1084	21	2.5	21	90	3	77	29	9	11	49	1.72
2374--2417	20	2.2	20	88	8	63	31	2	20	45	1.64
4967--6054	223	4.9	226	88	3	1573	32	16	14	35	1.89
5639--6054	106	3.8	105	70	13	270	32	16	14	36	1.89
4967--6054	225	4.9	224	88	3	1515	32	16	14	35	1.89
6925--7116	54	3.5	54	72	10	176	26	20	14	38	1.91
7076--7319	55	4.5	55	75	9	151	29	18	13	38	1.88
7262--7418	76	2.0	78	81	2	183	36	18	7	37	1.79
8007--8062	26	2.2	26	83	3	69	32	7	21	39	1.80
12129--12293	31	5.3	30	78	7	170	12	24	32	30	1.92
12129--12293	62	2.7	62	88	3	226	12	24	32	30	1.92
15223--15318	49	2.0	48	83	4	122	29	12	19	38	1.89
18287--18311	2	12.5	2	100	0	50	48	0	0	52	1.00
18837--19471	55	11.6	55	85	2	773	35	17	15	30	1.92
18837--19470	218	2.9	219	86	3	841	35	17	15	30	1.91
19821--19874	22	2.6	20	72	11	54	16	29	16	37	1.91
19946--19999	21	2.6	21	90	0	81	35	18	11	35	1.86
24858--25190	54	6.1	54	83	1	407	36	16	16	31	1.91
24866--25189	109	3.0	108	85	1	418	36	16	16	31	1.91
38942--39071	60	2.2	59	85	1	170	29	16	26	28	1.97
39147--39215	20	3.5	20	75	15	79	26	2	24	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39160--39217	13	4.4	13	75	12	64	25	1	29	43	1.65
39148--39228	40	2.0	40	97	0	153	29	2	25	41	1.68
39212--39405	44	4.4	44	92	3	302	37	7	23	31	1.82
39737--39771	12	2.9	12	91	0	61	31	14	20	34	1.92
42917--42952	17	2.1	17	100	0	72	36	5	19	38	1.75
43431--43480	23	2.1	24	85	3	66	62	24	0	14	1.32
43447--43479	15	2.2	15	94	0	57	60	24	0	15	1.35
52153--52191	10	3.9	10	80	12	53	30	0	10	58	1.31
52237--52325	32	2.7	33	74	5	83	40	2	10	47	1.50
52243--52621	195	1.9	195	88	2	573	38	4	11	45	1.60
52676--52958	145	2.0	144	78	2	298	42	4	6	47	1.47
58234--58284	3	17.7	3	80	15	63	60	1	0	37	1.08
58556--59312	55	13.8	55	89	2	1071	29	25	14	30	1.94
59238--59401	89	1.8	89	93	0	283	32	21	12	33	1.91
59394--59526	54	2.5	53	78	10	162	24	21	18	36	1.95
68128--68160	17	1.9	17	93	0	57	48	6	0	45	1.27
69100--69167	18	3.7	18	73	23	70	5	14	29	50	1.67
70791--70836	13	3.4	13	85	8	65	32	13	0	54	1.39
70797--70835	7	5.7	7	82	17	55	30	12	0	56	1.37
70874--70919	16	2.7	17	80	16	51	45	15	4	34	1.66
70919--70996	7	11.4	7	78	5	70	20	1	32	46	1.59
70924--70994	27	2.6	27	88	0	106	19	1	32	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71073--71109	19	2.0	18	89	5	56	40	0	8	51	1.32
71250--71292	19	2.4	18	85	11	54	27	6	11	53	1.63
71257--71292	19	1.9	19	88	5	56	25	5	13	55	1.60
71461--71512	21	2.5	21	87	0	77	23	0	26	50	1.50

Tables:   1

The End!