genome.fa.s4000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004000.1 Hibiscus syriacus cultivar Beakdansim tig00008716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56930

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903--982	38	2.1	36	88	6	115	51	0	5	43	1.23
1058--1097	20	2.0	20	85	0	53	52	2	5	40	1.37
8538--8626	29	3.1	29	93	0	151	24	32	31	11	1.90
8618--8682	32	2.0	32	90	0	103	30	20	33	15	1.93
8873--8918	23	2.0	23	100	0	92	21	21	26	30	1.99
9261--9336	28	2.7	29	82	12	86	32	0	11	55	1.36
9716--9774	17	3.4	17	71	17	57	40	0	10	49	1.37
12900--13107	49	4.3	49	93	1	339	42	0	11	46	1.40
13070--13121	21	2.5	20	81	9	59	46	0	7	46	1.31
13077--13103	14	1.9	14	100	0	54	44	0	11	44	1.39
13315--13366	19	2.9	18	73	21	56	36	0	11	51	1.38
13342--13616	12	22.2	11	71	17	136	43	1	9	45	1.46
13311--13458	35	4.5	35	69	22	129	38	1	10	49	1.46
13351--13616	14	20.1	13	74	20	175	43	1	8	45	1.45
13342--13629	26	11.6	25	76	13	217	43	2	8	45	1.46
13311--13514	97	2.1	98	94	2	358	41	1	9	47	1.47
13367--13629	72	3.7	70	80	11	247	44	2	8	44	1.46
13744--13785	17	2.5	16	88	11	66	40	0	0	59	0.97
16127--16165	11	3.5	11	80	13	53	38	12	0	48	1.42
16120--16168	22	2.2	22	100	0	98	38	14	0	46	1.44
16112--16230	30	4.3	30	76	19	118	43	12	0	42	1.48
16141--16191	15	3.3	16	72	10	61	41	13	0	45	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16468--16522	18	3.4	18	65	31	52	52	9	0	38	1.33
16649--16712	27	2.4	28	81	7	78	46	15	1	35	1.56
16791--16874	39	2.2	39	95	0	150	44	15	2	38	1.60
21863--21910	25	1.9	25	91	0	78	39	6	16	37	1.74
35913--35949	2	18.5	2	100	0	74	0	48	0	51	1.00
36886--36939	20	2.7	20	100	0	108	44	27	12	14	1.82
36925--37036	59	1.9	59	83	3	145	34	23	8	33	1.86
36925--37036	19	5.7	19	88	3	116	34	23	8	33	1.86
38570--38618	19	2.7	17	84	9	53	26	20	28	24	1.99
38569--38749	65	2.8	61	81	9	193	26	18	23	30	1.98
38590--38749	65	2.5	65	84	7	202	26	18	23	31	1.97
39260--39296	2	18.5	2	88	0	56	45	5	0	48	1.25
39853--39896	21	2.1	21	82	0	52	31	15	43	9	1.79
39982--40045	32	2.0	32	100	0	128	25	0	31	43	1.55
40615--40652	19	2.0	20	85	15	53	5	34	0	60	1.19
41113--41155	21	2.0	21	82	8	52	32	27	23	16	1.96
41792--41841	21	2.3	23	82	6	59	32	8	16	44	1.76
41841--41885	23	2.0	23	86	0	63	20	26	26	26	1.99
47377--47414	19	2.0	20	85	15	53	5	34	0	60	1.19
47875--47917	21	2.0	21	86	0	59	30	27	25	16	1.97
48607--48651	23	2.0	23	86	0	63	20	26	26	26	1.99
49847--49887	17	2.3	18	88	12	59	26	0	12	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50643--50680	14	2.7	14	100	0	76	47	23	0	28	1.52
52070--52166	21	4.6	21	78	11	92	24	18	32	23	1.97
52070--52166	42	2.3	42	77	10	108	24	18	32	23	1.97
54643--54699	22	2.6	23	73	18	57	31	17	31	19	1.95
54812--54854	19	2.2	20	87	4	61	39	16	20	23	1.92
54848--54969	20	6.3	20	86	6	171	18	11	23	46	1.81
54848--54969	59	2.1	57	90	3	190	18	11	23	46	1.81
54848--54969	39	3.2	40	87	4	171	18	11	23	46	1.81

Tables:   1

The End!