genome.fa.s4001.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004001.1 Hibiscus syriacus cultivar Beakdansim tig00008722_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178409

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255--294	16	2.4	17	87	8	55	60	5	5	30	1.40
2920--3042	25	5.0	25	92	3	189	30	15	19	34	1.93
3157--3215	3	20.0	3	74	22	54	62	0	0	37	0.95
3157--3215	18	3.5	17	82	11	68	62	0	0	37	0.95
3157--3215	27	2.2	26	85	14	77	62	0	0	37	0.95
3167--3217	17	3.1	15	78	21	50	66	0	0	33	0.92
3363--3532	40	4.0	40	68	15	115	27	19	30	22	1.98
3376--3572	91	2.2	86	94	4	340	27	17	29	25	1.97
3467--3761	141	2.2	136	80	9	311	25	17	29	27	1.98
15696--15738	16	2.6	16	85	7	52	58	4	4	32	1.39
18386--18527	25	5.8	25	89	5	193	28	14	20	35	1.92
18386--18533	49	3.0	50	88	4	221	28	14	20	36	1.92
18386--18533	74	2.0	74	90	2	235	28	14	20	36	1.92
21477--21538	30	2.1	30	87	0	88	22	33	25	17	1.96
25737--25776	14	2.8	14	84	3	53	40	2	0	57	1.12
25737--25771	15	2.4	15	90	4	54	34	2	0	62	1.10
27529--27573	17	2.6	17	78	3	54	42	8	2	46	1.47
27583--27625	22	1.9	23	85	4	61	32	0	4	62	1.15
29008--29082	38	1.9	39	86	2	107	32	2	6	58	1.38
29898--29932	15	2.3	15	100	0	70	48	11	0	40	1.39
29905--29942	17	2.2	17	90	0	58	52	7	0	39	1.31
30017--30074	7	8.3	7	76	0	53	50	29	0	20	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29933--30027	48	2.0	48	81	6	111	50	9	7	32	1.62
30017--30069	21	2.5	21	84	0	70	50	28	0	20	1.48
30426--30486	8	8.1	7	84	15	54	52	3	0	44	1.17
30420--30477	2	28.0	2	89	6	89	50	1	1	46	1.22
30560--30610	21	2.4	21	86	0	75	54	27	0	17	1.43
30869--31100	20	11.5	20	67	16	86	42	4	6	46	1.49
30954--31096	2	71.5	2	66	18	57	45	3	4	46	1.39
30954--31022	11	6.2	11	73	14	52	49	1	4	44	1.31
30958--31013	29	2.0	28	92	3	94	46	1	5	46	1.36
31174--31854	209	3.2	209	93	2	1136	28	12	8	51	1.68
38433--38472	14	2.8	14	84	3	53	40	2	0	57	1.12
38433--38467	15	2.4	15	90	4	54	34	2	0	62	1.10
40224--40268	17	2.6	17	78	3	54	42	8	2	46	1.47
41702--41776	38	1.9	39	83	2	98	30	4	6	58	1.42
42413--42442	16	1.9	15	93	6	51	40	0	13	46	1.43
42607--42638	2	16.0	2	100	0	64	50	0	0	50	1.00
42591--42672	35	2.3	36	81	8	96	47	2	3	46	1.33
42602--42724	49	2.5	49	80	8	128	51	4	5	39	1.45
42722--42779	7	8.3	7	76	0	62	48	31	0	20	1.50
42636--42732	48	2.0	49	83	2	124	50	8	7	34	1.60
42722--42774	21	2.5	21	90	0	79	49	30	0	20	1.50
43123--43161	2	19.0	2	94	5	69	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43244--43294	21	2.4	21	86	0	75	54	27	0	17	1.43
43553--43776	20	11.3	20	66	17	76	43	4	5	45	1.49
43637--43781	2	73.0	2	65	18	54	45	3	4	46	1.39
43641--43694	27	2.0	28	92	3	92	46	1	5	46	1.37
43849--44549	209	3.3	209	94	1	1188	27	11	8	51	1.68
55083--55156	36	2.1	36	97	0	139	51	4	14	29	1.61
56666--56705	18	2.2	18	95	0	71	37	12	12	37	1.81
59215--59254	21	1.9	21	94	0	71	30	15	7	47	1.72
59249--59347	33	3.0	33	94	1	164	32	7	15	45	1.73
59333--59387	13	4.2	13	75	13	58	34	3	12	49	1.59
59583--59639	21	2.7	21	88	0	87	19	24	26	29	1.98
59824--59856	17	1.9	17	93	0	57	42	12	9	36	1.74
59950--59981	16	2.0	17	88	11	50	43	21	21	12	1.86
60062--60092	16	1.9	16	100	0	62	45	16	19	19	1.86
71743--71782	2	20.0	2	100	0	80	50	0	0	50	1.00
72072--72105	18	2.0	18	88	11	54	41	5	8	44	1.60
73062--73120	31	1.9	31	92	0	100	40	6	10	42	1.65
73170--73365	18	12.1	18	61	23	69	53	12	1	32	1.46
73147--73195	22	2.2	21	79	10	53	53	12	0	34	1.39
73147--73874	80	8.9	80	78	15	701	52	13	0	33	1.43
73268--73353	14	5.6	14	67	20	55	55	8	0	36	1.29
73246--73874	32	22.7	32	69	25	334	52	13	0	33	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73422--73463	22	1.9	22	100	0	84	52	14	0	33	1.42
73423--73471	22	2.2	22	88	3	71	55	14	0	30	1.40
73475--73517	22	2.0	22	100	0	86	51	13	0	34	1.42
73373--73917	54	10.1	54	75	16	447	52	12	0	34	1.41
73477--73525	22	2.2	22	88	3	71	55	14	0	30	1.40
73581--73718	18	8.4	18	64	24	65	54	13	0	32	1.39
73633--73686	22	2.5	21	71	11	56	53	16	0	29	1.43
73680--73732	14	3.5	14	72	18	52	56	5	0	37	1.23
73721--73763	22	2.0	22	90	0	68	53	9	0	37	1.33
73810--73850	21	1.9	21	85	5	55	51	17	0	31	1.46
73852--73894	20	2.1	20	95	4	77	51	13	0	34	1.42
73806--73917	52	2.1	53	96	1	208	51	12	0	35	1.40
73897--74029	15	8.5	15	81	11	151	50	1	0	48	1.10
73845--73997	67	2.3	67	84	5	186	50	5	0	43	1.26
73940--74029	45	2.0	45	97	0	171	47	0	0	52	1.00
75819--75867	21	2.4	21	90	10	75	24	2	2	71	1.07
75819--75867	10	4.8	10	80	5	62	24	2	2	71	1.07
76857--76917	31	2.1	27	85	11	77	34	4	0	60	1.18
77038--77161	62	2.0	62	96	0	230	54	8	11	25	1.65
77648--77678	6	5.2	6	100	0	62	19	48	0	32	1.49
80763--81994	618	2.0	610	98	1	2383	43	15	13	27	1.84
82441--82487	22	2.2	22	84	3	60	57	10	2	29	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85710--86090	189	2.0	190	98	1	748	32	13	17	35	1.89
89153--89185	2	16.5	2	100	0	66	51	0	0	48	1.00
93432--93461	15	2.0	15	100	0	60	13	20	26	40	1.89
96108--96155	20	2.4	20	82	0	60	10	29	58	2	1.43
96125--96156	17	1.9	16	93	6	55	9	31	59	0	1.29
96292--96368	37	2.1	37	85	4	102	48	1	3	46	1.28
101269--101574	43	7.2	43	77	6	185	33	18	21	26	1.96
101269--101574	85	3.6	85	79	2	328	33	18	21	26	1.96
105322--105634	41	7.6	41	77	4	263	37	17	17	27	1.93
105314--105634	83	3.9	82	78	5	299	36	17	18	27	1.94
107830--107870	21	2.0	21	90	0	64	48	0	9	41	1.36
113880--113934	26	2.1	26	93	6	94	27	20	18	34	1.95
114492--114521	15	2.0	15	93	0	51	43	3	26	26	1.70
119362--119453	23	4.0	23	86	0	130	28	26	26	19	1.99
119469--119681	103	2.1	103	95	0	381	36	23	14	26	1.92
121053--121112	20	2.9	21	87	7	86	18	26	25	30	1.98
123470--123637	85	2.0	84	83	6	214	31	18	19	30	1.96
123609--123647	13	3.0	13	80	0	51	35	20	17	25	1.95
125677--125742	3	21.0	3	82	11	71	62	0	0	37	0.96
125675--125742	27	2.5	27	88	9	95	61	0	0	38	0.96
125678--125741	21	2.9	21	84	9	83	62	0	0	37	0.95
125665--125742	24	3.2	24	79	12	95	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143500--143608	50	2.2	50	88	1	157	15	36	28	19	1.92
146073--146181	49	2.2	49	83	1	137	21	29	33	15	1.94
156267--156336	35	2.0	35	97	0	131	35	14	15	34	1.88
159731--159797	22	3.3	21	78	13	61	31	1	2	64	1.18
171565--171630	21	3.1	21	80	0	78	27	12	27	33	1.92

Tables:   1

The End!