genome.fa.s4002.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004002.1 Hibiscus syriacus cultivar Beakdansim tig00008724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56069

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12942--13164	76	3.0	76	82	8	257	31	0	11	56	1.41
18983--19052	28	2.5	28	90	2	104	15	20	21	42	1.88
18983--19060	28	2.8	27	84	7	77	19	17	21	41	1.91
19043--19322	84	3.4	84	78	4	239	26	18	23	31	1.98
19328--19407	33	2.4	33	95	0	142	33	8	20	37	1.83
19361--19585	67	3.2	67	82	9	213	38	12	20	28	1.89
19460--19795	36	9.4	36	82	7	409	41	13	19	25	1.89
19460--19795	73	4.7	73	80	9	406	41	13	19	25	1.89
19490--19838	138	2.6	137	83	8	407	41	14	18	25	1.88
19728--19816	21	4.5	21	77	16	109	44	12	17	24	1.83
19728--19844	57	2.0	58	91	1	191	41	13	17	27	1.88
21108--21362	95	2.7	95	86	3	329	31	18	17	31	1.95
24749--24784	2	18.0	2	100	0	72	50	0	0	50	1.00
24856--24882	2	13.5	2	100	0	54	51	0	0	48	1.00
25088--25164	20	3.8	20	89	6	120	40	19	19	20	1.92
25361--25426	22	3.0	22	90	0	105	24	39	15	21	1.91
25749--25839	20	4.6	20	86	1	94	15	17	21	45	1.86
25803--25847	20	2.2	20	88	0	63	15	13	17	53	1.73
27728--27877	20	8.3	20	68	23	73	44	20	17	18	1.88
27926--28031	20	5.3	20	91	0	131	20	18	21	38	1.93
28517--28558	21	2.2	19	87	12	59	21	33	19	26	1.97
28513--28619	42	2.5	42	77	8	119	20	36	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30004--30039	14	2.6	14	90	0	54	30	0	22	47	1.52
30165--30218	14	3.5	14	73	22	54	44	20	24	11	1.83
30145--30240	33	2.9	34	92	3	158	42	19	23	13	1.87
30178--30245	20	3.8	19	72	21	74	47	19	22	11	1.81
30251--30317	20	3.7	19	73	20	72	13	20	19	46	1.83
30255--30350	33	2.9	34	88	3	140	13	22	20	42	1.87
30322--30410	20	4.4	20	91	2	144	16	22	25	34	1.95
32843--32896	24	2.2	24	93	0	90	40	20	18	20	1.91
32843--32910	24	2.8	24	84	0	64	38	20	17	23	1.93
33737--33820	20	4.2	20	95	0	141	22	20	27	29	1.98
33810--33922	20	5.7	20	89	0	163	22	17	18	41	1.90
33919--33964	21	2.2	21	96	0	83	39	19	26	15	1.91
39524--39694	76	2.3	75	83	5	211	29	1	11	57	1.44
40332--40375	18	2.4	19	88	3	63	20	6	0	72	1.07
40428--40479	18	2.9	18	79	0	59	25	1	0	73	0.94
45891--45923	15	2.2	15	100	0	66	30	6	48	15	1.69
52394--52551	21	7.8	20	70	7	77	37	24	17	19	1.93
52519--52712	20	9.6	20	76	8	76	35	25	19	19	1.95
52519--52712	40	4.8	39	82	3	199	35	25	19	19	1.95
52519--52711	60	3.2	60	83	0	251	35	25	19	19	1.95
53090--53160	33	2.2	33	92	0	115	11	22	18	47	1.80
53281--53335	14	3.6	14	73	21	56	41	23	25	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53281--53351	33	2.2	33	94	0	124	43	25	22	8	1.81
53347--53444	19	5.7	19	70	22	81	10	24	22	42	1.84
53369--53458	14	5.7	14	74	23	81	8	25	23	42	1.83
53352--53466	33	3.5	33	95	0	212	9	24	20	45	1.81
55154--55527	92	4.1	93	97	2	697	22	12	18	46	1.83
55586--55697	19	6.5	18	72	19	105	46	28	17	7	1.75
55606--55697	33	2.8	32	90	6	141	45	28	18	7	1.76
55693--55827	19	7.6	19	75	16	128	11	19	23	45	1.82
55715--55771	14	3.7	14	77	20	60	10	21	22	45	1.82
55698--55790	33	2.8	33	95	0	168	10	20	21	47	1.80

Tables:   1

The End!