Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004004.1 Hibiscus syriacus cultivar Beakdansim tig00008727_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52837

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
284--324
22
1.9
21
85
14
57
26
34
24
14
1.94
4115--4140
12
2.2
12
100
0
52
30
7
11
50
1.67
8249--8304
21
2.7
21
91
0
76
23
25
32
19
1.98
12212--12236
3
8.3
3
100
0
50
64
0
0
36
0.94
13731--13758
14
2.0
14
100
0
56
42
14
0
42
1.45
20492--20524
2
16.5
2
100
0
66
48
0
0
51
1.00
21653--21679
14
1.9
14
100
0
54
51
11
0
37
1.37
22340--22365
2
13.0
2
100
0
52
50
0
0
50
1.00
25348--25399
20
2.5
21
78
3
52
46
3
0
50
1.20
25432--25473
19
2.2
19
91
0
66
42
21
0
35
1.53
27010--28406
698
2.0
698
99
0
2758
37
14
13
35
1.85
34811--34848
19
2.0
20
89
5
60
26
2
15
55
1.54
35078--35120
23
1.9
22
90
4
68
27
20
25
25
1.99
36153--36216
30
2.1
30
82
5
76
53
18
4
23
1.64
36656--36732
39
2.0
39
87
5
111
33
10
9
46
1.70
38416--38571
64
2.4
65
86
5
210
30
19
21
27
1.98
39179--39212
17
2.0
17
88
0
50
47
0
0
52
1.00
39194--39252
12
4.6
13
73
10
59
40
1
3
54
1.27
39194--39249
25
2.2
26
81
12
71
41
1
3
53
1.29
39213--39265
25
2.1
25
85
0
70
32
7
3
56
1.45
40341--40370
2
15.5
2
93
6
53
0
53
0
46
1.00
43234--43271
2
19.0
2
100
0
76
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44472--44521
17
2.7
18
78
12
57
66
6
2
26
1.26
45284--45338
23
2.3
24
81
6
67
21
12
20
45
1.84
45301--45385
23
3.7
23
85
0
107
22
16
22
38
1.92
52629--52659
14
2.3
13
94
5
53
12
6
12
67
1.40

Tables:   1

The End!