Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004005.1 Hibiscus syriacus cultivar Beakdansim tig00008728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58486

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4909--4951
16
2.7
16
81
0
59
39
18
4
37
1.72
7654--7698
18
2.4
18
85
10
56
44
0
2
53
1.13
8181--8224
22
2.0
21
82
4
52
31
2
2
63
1.19
8219--8248
2
15.0
2
100
0
60
50
0
0
50
1.00
9171--9221
25
2.0
26
85
11
70
33
9
1
54
1.44
16119--16182
3
21.3
3
100
0
128
32
0
0
67
0.91
18680--18762
28
3.0
28
96
0
148
16
30
15
37
1.90
21340--21365
9
2.9
9
100
0
52
19
11
23
46
1.82
23599--23668
20
3.5
19
80
7
86
25
24
15
34
1.95
23601--23677
40
1.9
40
92
5
129
24
23
15
36
1.94
23600--23688
40
2.2
40
84
7
119
28
22
14
34
1.93
26950--26990
12
3.4
12
93
0
64
48
26
4
19
1.69
28709--28779
21
3.4
21
78
3
81
21
22
36
19
1.95
28709--28831
42
2.9
42
83
4
142
25
19
34
20
1.96
28724--28827
21
4.9
21
76
9
104
26
18
33
21
1.96
29098--29155
20
2.8
21
92
5
100
37
27
13
20
1.91
31352--31394
22
2.0
22
95
0
77
20
13
39
25
1.90
31511--31548
20
2.0
20
84
5
51
50
13
10
26
1.73
31574--31724
20
7.5
20
77
5
108
25
14
23
37
1.93
31574--31680
40
2.7
40
80
0
124
23
14
24
38
1.91
36678--36748
33
2.2
33
87
5
99
53
26
11
8
1.65
39281--39343
26
2.4
25
75
17
58
71
0
6
22
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41840--41871
15
2.1
15
94
0
55
56
9
25
9
1.61
52090--52174
23
3.8
22
80
4
82
24
31
23
20
1.98
52103--52157
23
2.4
22
88
8
83
20
34
21
23
1.97
54352--54403
26
2.0
26
92
0
86
23
21
21
34
1.97
56344--56393
23
2.2
23
85
0
64
38
6
20
36
1.77
56307--56469
87
1.9
87
93
0
281
40
12
14
33
1.83
56956--57227
132
2.1
130
88
2
402
26
14
14
44
1.83

Tables:   1

The End!