genome.fa.s4006.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004006.1 Hibiscus syriacus cultivar Beakdansim tig00008732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92147

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4741--4792	27	1.9	27	84	0	68	19	3	15	61	1.48
6219--6279	21	3.2	21	65	29	64	31	4	21	42	1.74
6211--6329	35	3.3	37	88	8	174	31	5	19	43	1.72
6734--6770	16	2.3	16	85	0	56	35	8	21	35	1.83
10329--10389	21	3.2	21	65	29	64	31	4	21	42	1.74
10321--10439	35	3.3	37	88	8	174	31	5	19	43	1.72
11721--11794	30	2.5	30	93	4	123	18	27	24	29	1.98
14372--14567	90	2.2	91	86	5	272	23	25	25	26	2.00
19349--19391	20	2.2	20	95	0	77	25	9	2	62	1.37
26390--26419	2	15.0	2	100	0	60	50	0	0	50	1.00
29944--29991	2	24.0	2	100	0	96	50	0	0	50	1.00
32698--32734	14	2.8	14	92	8	60	0	5	8	86	0.70
33135--33183	25	2.0	25	92	4	82	26	18	18	36	1.94
33267--33331	3	21.7	3	75	12	62	63	3	3	30	1.25
33481--33894	134	3.2	130	93	3	695	23	18	31	26	1.98
33943--34004	28	2.2	28	88	5	90	51	12	11	24	1.72
34138--34254	38	3.3	35	88	7	123	34	14	15	35	1.88
34167--34254	38	2.3	38	100	0	176	31	14	13	39	1.85
34337--34518	101	1.8	101	82	4	235	38	13	12	35	1.82
34649--34726	40	2.0	40	97	0	147	32	12	24	30	1.93
34708--34831	63	2.0	63	87	1	178	42	11	15	30	1.82
34999--35274	67	4.2	64	89	6	303	43	13	12	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35106--35303	30	6.1	31	67	24	90	41	14	10	33	1.80
35064--35286	67	3.4	67	95	3	382	43	13	11	31	1.79
35291--35394	52	2.0	54	88	3	158	38	16	12	32	1.86
35405--35533	29	4.6	29	89	6	194	42	14	10	31	1.80
35405--35532	56	2.3	55	89	6	186	42	14	10	31	1.81
35538--35581	21	2.0	22	82	8	54	52	4	13	29	1.60
35644--35717	37	2.0	37	100	0	148	37	8	13	40	1.74
35822--35925	36	3.0	36	80	9	117	36	11	20	31	1.88
35823--35941	36	3.4	36	78	11	104	36	12	21	29	1.90
35857--35953	36	2.7	36	82	9	101	35	12	19	32	1.89
36596--36633	18	2.1	18	95	0	67	21	0	28	50	1.49
37796--37838	14	3.0	14	79	3	50	2	20	4	72	1.14
38451--38544	46	2.1	45	88	6	136	37	8	25	28	1.85
42836--42869	13	2.7	13	86	4	52	0	2	8	88	0.62
43272--43320	25	2.0	25	92	4	82	26	18	18	36	1.94
43404--43465	3	20.7	3	74	12	56	62	3	3	30	1.26
43404--43467	24	2.7	23	83	11	76	64	3	3	29	1.24
46743--46779	18	2.0	18	89	5	56	59	5	13	21	1.54
51645--51701	25	2.2	25	75	9	62	45	1	1	50	1.22
52004--52049	18	2.6	17	93	3	74	32	6	32	28	1.83
52419--52930	256	2.0	245	87	7	742	39	19	13	27	1.89
71367--71518	43	3.5	43	73	14	125	34	15	19	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73799--73856	23	2.3	24	80	19	66	36	1	0	62	1.06
73973--74027	20	2.7	20	85	2	74	49	3	0	47	1.19
74809--74877	23	3.0	23	84	0	93	26	24	27	21	1.99
75492--75614	63	1.9	64	83	1	158	26	16	21	35	1.94
81707--81751	23	2.0	23	90	0	72	24	24	31	20	1.98
83549--83606	23	2.3	24	80	19	66	36	1	0	62	1.06
83726--83780	20	2.7	20	85	2	74	47	3	1	47	1.30
92081--92134	28	1.9	28	84	0	72	31	12	12	42	1.81

Tables:   1

The End!