genome.fa.s4007.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004007.1 Hibiscus syriacus cultivar Beakdansim tig00008733_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54605

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1977--2981	348	2.9	351	96	1	1864	27	14	22	35	1.93
14049--14089	21	2.0	21	85	9	57	7	21	7	63	1.45
21584--21635	2	26.0	2	100	0	104	50	0	0	50	1.00
29495--29543	14	3.6	14	77	17	50	48	2	0	48	1.12
29514--29544	14	2.1	15	94	5	55	51	0	0	48	1.00
37862--37887	2	13.0	2	100	0	52	50	0	0	50	1.00
37942--38007	2	33.0	2	100	0	132	50	0	0	50	1.00
39029--39080	20	2.5	20	75	3	50	40	17	23	19	1.91
39072--39122	20	2.5	20	93	0	84	33	21	19	25	1.97
39066--39182	61	1.9	61	82	0	144	35	23	17	23	1.96
39131--39183	20	2.7	20	90	0	79	26	26	20	26	1.99
39742--39781	19	2.1	19	85	0	53	52	25	17	5	1.64
39791--39881	36	2.6	33	91	6	137	13	26	21	38	1.90
39821--39897	20	4.2	19	75	20	74	14	23	22	40	1.90
39846--39906	20	3.1	19	84	9	77	13	22	18	45	1.83
43382--43417	14	2.6	14	95	0	63	30	0	25	44	1.54
43522--43588	19	3.8	19	75	18	72	46	20	20	11	1.82
43597--43723	33	3.9	32	84	8	175	15	22	18	43	1.88
43590--43722	66	2.0	66	94	0	230	17	21	18	42	1.90
46194--46247	24	2.2	24	90	0	81	38	20	16	24	1.92
46981--47031	20	2.5	20	93	0	93	29	17	31	21	1.96
47322--47399	20	3.9	20	98	0	138	38	23	23	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47437--47485	19	2.6	19	96	0	89	16	20	14	48	1.80
47601--47637	14	2.6	14	86	0	56	48	21	0	29	1.50
49505--49572	20	3.5	19	78	6	73	38	22	23	16	1.93
49545--49602	14	3.4	18	71	24	54	46	22	18	12	1.82
49561--49618	14	3.9	14	79	16	71	48	25	17	8	1.75
49545--49623	32	2.4	33	95	2	142	46	24	18	10	1.80
49652--49708	14	3.8	14	74	17	60	12	17	22	47	1.81
49642--49724	32	2.6	32	96	0	148	13	19	20	46	1.82
49709--49763	20	2.8	19	83	8	65	16	23	23	36	1.94
50243--50287	18	2.5	18	88	0	72	13	15	44	26	1.83
51536--51573	20	1.9	20	88	0	58	50	21	15	13	1.78
51546--51612	20	3.5	20	87	8	93	35	25	17	20	1.95
51875--51918	22	2.0	22	90	0	70	20	15	43	20	1.88
52105--52160	20	2.8	20	97	0	103	26	19	30	23	1.98
52084--52214	20	6.7	19	77	12	88	23	18	25	32	1.97
52203--52259	20	2.8	21	78	5	71	15	24	17	42	1.88
52203--52288	20	4.6	20	70	18	67	16	22	19	41	1.90
52223--52288	34	1.9	34	96	0	123	15	19	21	43	1.87

Tables:   1

The End!