genome.fa.s4009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004009.1 Hibiscus syriacus cultivar Beakdansim tig00008741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48011

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--142	66	2.2	65	84	6	180	20	26	9	42	1.83
85--245	25	7.0	25	64	22	93	18	24	11	46	1.81
65--245	45	4.0	46	87	6	271	18	24	11	45	1.82
43--232	20	8.7	20	70	20	123	19	26	10	43	1.83
6640--6775	71	1.9	71	92	0	227	18	21	11	48	1.79
6635--6855	26	9.5	26	67	22	132	18	21	10	48	1.78
6692--6855	46	3.6	46	88	0	231	18	21	10	49	1.78
6717--6842	20	5.7	20	68	20	72	19	23	10	46	1.80
7337--7374	18	2.2	18	85	4	51	18	21	21	39	1.93
9882--9916	16	2.1	17	94	5	63	40	5	2	51	1.40
9904--10012	25	4.8	22	71	18	64	44	2	8	44	1.48
9907--9992	21	4.0	21	72	14	68	44	3	8	44	1.50
9906--9958	20	2.6	21	84	3	72	39	1	7	50	1.41
9906--9971	20	3.3	20	79	10	55	42	3	9	45	1.51
9966--10011	25	1.9	24	86	8	67	45	2	6	45	1.41
10040--10082	18	2.3	19	96	4	79	44	0	6	48	1.29
10031--10091	19	2.9	21	83	14	65	42	0	6	50	1.28
10094--10173	22	3.7	21	74	11	56	18	5	1	75	1.06
10088--10145	31	1.9	30	86	10	82	15	3	1	79	0.95
10118--10173	16	3.6	16	72	11	53	19	3	1	75	1.05
12345--12489	5	27.2	5	67	19	53	19	7	2	71	1.21
12333--12378	22	2.2	22	88	7	69	26	2	0	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12337--12387	22	2.3	22	80	9	68	23	3	0	72	1.01
12326--12405	27	3.1	26	81	13	87	21	3	1	73	1.06
12323--12410	17	4.9	18	72	18	51	21	4	1	72	1.09
13042--13079	19	2.1	19	90	5	60	36	2	0	60	1.11
18182--18387	103	2.0	102	93	0	349	30	25	17	26	1.97
27089--27330	123	2.0	123	86	3	344	39	21	11	26	1.88
27089--27361	123	2.2	123	84	2	343	38	21	12	27	1.89
27308--27910	270	2.2	270	86	2	827	35	22	15	25	1.94
29040--29073	4	8.2	4	87	6	50	26	0	0	73	0.83
29043--29084	17	2.4	18	88	4	59	23	2	0	73	0.94
29132--29175	22	2.0	22	86	0	61	20	4	2	72	1.13
30429--30463	11	3.2	11	100	0	70	74	0	17	8	1.06
30429--30461	6	5.8	6	86	13	52	72	0	18	9	1.10
34717--34792	20	3.8	20	84	5	73	32	7	22	36	1.83
38483--38528	3	15.3	3	100	0	92	65	0	0	34	0.93
39153--39262	43	2.6	43	86	0	148	21	17	32	28	1.96
39468--39658	64	3.0	64	84	4	253	29	10	22	36	1.89
39468--39634	61	2.7	61	86	2	208	30	12	20	35	1.90
39923--39998	32	2.4	32	86	0	98	30	21	17	31	1.96
40659--40720	27	2.3	27	100	0	124	45	9	11	33	1.73
41069--41110	20	2.1	20	86	8	59	7	14	2	76	1.10
44429--44516	30	3.0	30	80	8	90	57	10	11	20	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44468--44533	29	2.3	28	82	12	80	62	12	10	15	1.55

Tables:   1

The End!