Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004013.1 Hibiscus syriacus cultivar Beakdansim tig00008754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46593

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
130--189
31
2.0
31
83
9
79
15
16
11
56
1.67
4191--4379
105
1.8
105
88
2
290
31
19
11
38
1.87
5920--6073
18
8.2
19
72
18
101
50
5
2
42
1.38
6015--6130
13
8.8
13
68
14
76
47
6
6
40
1.53
5945--6122
80
2.3
79
90
4
274
46
5
5
42
1.49
6098--6245
15
10.3
15
70
18
59
51
3
5
39
1.42
6114--6171
18
3.4
18
83
11
77
56
3
6
32
1.42
6098--6221
17
7.2
17
75
13
51
51
2
4
41
1.36
6196--6245
15
3.3
16
83
10
61
50
4
6
40
1.46
6409--6456
2
23.0
2
79
8
51
43
2
6
47
1.40
6400--6474
20
4.1
19
75
13
75
40
4
8
48
1.51
6401--6473
35
2.1
35
85
5
96
41
4
8
46
1.53
6474--6574
7
14.4
7
82
0
112
18
0
31
49
1.48
6804--6841
20
2.0
20
94
5
69
26
36
2
34
1.71
6911--7016
2
53.5
2
88
9
164
50
0
1
46
1.18
7451--7507
2
28.5
2
89
7
89
45
1
0
52
1.11
7576--7630
27
2.0
27
89
0
83
45
0
30
23
1.53
7579--7642
27
2.4
27
84
5
76
48
0
26
25
1.51
9368--9412
22
2.0
22
95
0
81
8
20
51
20
1.73
9375--9419
5
8.8
5
81
13
56
4
20
53
22
1.63
14891--14928
17
2.2
17
100
0
76
10
23
47
18
1.79
14938--15006
9
7.3
9
80
8
66
26
27
31
14
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14940--15027
29
3.0
30
75
11
85
29
26
27
17
1.97
15893--15942
24
2.1
23
82
10
57
36
8
0
56
1.29
16305--16335
16
1.9
16
93
0
53
41
12
22
22
1.88
17680--18030
138
2.5
138
85
4
440
29
12
13
44
1.81
24816--24864
19
2.5
20
83
3
55
30
14
2
53
1.52
30795--30836
22
1.9
22
90
0
66
23
23
4
47
1.70
33867--33996
69
1.9
69
95
3
235
30
19
32
18
1.96
35759--35788
3
9.7
3
92
7
51
33
3
0
63
1.11
35759--35794
13
2.8
13
91
4
56
33
5
0
61
1.19

Tables:   1

The End!